Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.68■■■□□ 2.5
VPS53Q5VIR6 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.67■■■□□ 2.5
VPS53Q5VIR6 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
VPS53Q5VIR6 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.67■■■□□ 2.5
VPS53Q5VIR6 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.67■■■□□ 2.5
VPS53Q5VIR6 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
VPS53Q5VIR6 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
VPS53Q5VIR6 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.65■■■□□ 2.5
VPS53Q5VIR6 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.65■■■□□ 2.5
VPS53Q5VIR6 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.64■■■□□ 2.5
VPS53Q5VIR6 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.64■■■□□ 2.5
VPS53Q5VIR6 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.49
VPS53Q5VIR6 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.63■■■□□ 2.49
VPS53Q5VIR6 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
VPS53Q5VIR6 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
VPS53Q5VIR6 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
VPS53Q5VIR6 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.62■■■□□ 2.49
VPS53Q5VIR6 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
VPS53Q5VIR6 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
VPS53Q5VIR6 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.61■■■□□ 2.49
VPS53Q5VIR6 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.61■■■□□ 2.49
VPS53Q5VIR6 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.61■■■□□ 2.49
VPS53Q5VIR6 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC30.61■■■□□ 2.49
VPS53Q5VIR6 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
VPS53Q5VIR6 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
VPS53Q5VIR6 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.6■■■□□ 2.49
VPS53Q5VIR6 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.59■■■□□ 2.49
VPS53Q5VIR6 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L13-201ENST00000554103 1267 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L15-201ENST00000611059 1267 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L23-201ENST00000615195 1269 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L24-201ENST00000617576 1269 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L22-201ENST00000618238 1269 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L20-201ENST00000619712 1269 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L21-201ENST00000622058 1269 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L10-201ENST00000622460 1267 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 DUX4L25-201ENST00000624915 1269 ntBASIC30.59■■■□□ 2.49
VPS53Q5VIR6 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
VPS53Q5VIR6 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
VPS53Q5VIR6 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
VPS53Q5VIR6 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
VPS53Q5VIR6 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
VPS53Q5VIR6 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
VPS53Q5VIR6 CR559946.2-201ENST00000623684 991 ntBASIC30.57■■■□□ 2.48
VPS53Q5VIR6 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC30.57■■■□□ 2.48
VPS53Q5VIR6 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
VPS53Q5VIR6 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
VPS53Q5VIR6 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.56■■■□□ 2.48
VPS53Q5VIR6 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
VPS53Q5VIR6 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.55■■■□□ 2.48
VPS53Q5VIR6 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
VPS53Q5VIR6 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
VPS53Q5VIR6 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
VPS53Q5VIR6 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30.54■■■□□ 2.48
VPS53Q5VIR6 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
VPS53Q5VIR6 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
VPS53Q5VIR6 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
VPS53Q5VIR6 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.52■■■□□ 2.48
VPS53Q5VIR6 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
VPS53Q5VIR6 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
VPS53Q5VIR6 MIR3648-2-201ENST00000581792 180 ntBASIC30.51■■■□□ 2.47
VPS53Q5VIR6 MIR3648-1-201ENST00000615959 180 ntBASIC30.51■■■□□ 2.47
VPS53Q5VIR6 AC110285.7-201ENST00000624417 1536 ntBASIC30.51■■■□□ 2.47
VPS53Q5VIR6 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
VPS53Q5VIR6 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
VPS53Q5VIR6 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
VPS53Q5VIR6 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
VPS53Q5VIR6 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.49■■■□□ 2.47
VPS53Q5VIR6 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.49■■■□□ 2.47
VPS53Q5VIR6 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.48■■■□□ 2.47
VPS53Q5VIR6 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS53Q5VIR6 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
VPS53Q5VIR6 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC30.47■■■□□ 2.47
VPS53Q5VIR6 AC016575.1-201ENST00000607026 382 ntBASIC30.47■■■□□ 2.47
VPS53Q5VIR6 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
VPS53Q5VIR6 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.46■■■□□ 2.47
VPS53Q5VIR6 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.46■■■□□ 2.47
VPS53Q5VIR6 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
VPS53Q5VIR6 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.44■■■□□ 2.46
VPS53Q5VIR6 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.44■■■□□ 2.46
VPS53Q5VIR6 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.44■■■□□ 2.46
VPS53Q5VIR6 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC30.44■■■□□ 2.46
VPS53Q5VIR6 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
VPS53Q5VIR6 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
VPS53Q5VIR6 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.43■■■□□ 2.46
VPS53Q5VIR6 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.43■■■□□ 2.46
VPS53Q5VIR6 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.43■■■□□ 2.46
VPS53Q5VIR6 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
VPS53Q5VIR6 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.42■■■□□ 2.46
VPS53Q5VIR6 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.42■■■□□ 2.46
VPS53Q5VIR6 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
VPS53Q5VIR6 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
VPS53Q5VIR6 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.41■■■□□ 2.46
VPS53Q5VIR6 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.41■■■□□ 2.46
VPS53Q5VIR6 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.41■■■□□ 2.46
VPS53Q5VIR6 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
VPS53Q5VIR6 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.4■■■□□ 2.46
VPS53Q5VIR6 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
VPS53Q5VIR6 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
VPS53Q5VIR6 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms