Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 RNA5SP273-201ENST00000362484 113 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 Y_RNA.23-201ENST00000362496 106 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 SNORA63.4-201ENST00000362763 126 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 RNU4-56P-201ENST00000364700 142 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 SNORA11B-201ENST00000408175 129 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 SSXP9-201ENST00000417503 292 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AL035660.1-201ENST00000422041 222 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AL133173.1-201ENST00000423458 397 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 MTND4LP9-201ENST00000427694 174 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 HSPD1P21-201ENST00000436541 245 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 RPS15AP7-201ENST00000439294 405 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 snoU13.30-201ENST00000458951 104 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AC022795.1-201ENST00000473808 480 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 HMGB3P3-201ENST00000510526 400 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 APOOP4-201ENST00000513530 597 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 Y_RNA.686-201ENST00000516548 134 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 snoU109.6-201ENST00000516831 118 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 RN7SKP272-201ENST00000516988 232 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AC136777.2-201ENST00000522979 358 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AC023575.1-201ENST00000580510 358 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 SAMMSON-226ENST00000642089 1582 ntBASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
PCDHB3Q9Y5E6 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 RNU1-146P-201ENST00000364015 165 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 Y_RNA.217-201ENST00000364214 105 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 RNU6-879P-201ENST00000364328 108 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 RNU105B-201ENST00000364478 208 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AL096829.1-201ENST00000413677 457 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 SDHDP6-201ENST00000414693 480 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AL358472.1-201ENST00000431295 329 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 TBCAP1-201ENST00000436520 327 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 MRPL48P1-201ENST00000445390 636 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 GAPDHP25-201ENST00000447061 1001 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC009237.7-201ENST00000447357 229 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 Y_RNA.641-201ENST00000459414 105 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC083795.1-201ENST00000491760 320 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 RNA5SP438-201ENST00000516561 112 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 RNU6-1234P-201ENST00000516877 103 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AP002001.1-203ENST00000534002 267 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 HMGB1P14-201ENST00000557424 591 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AL136131.3-201ENST00000607600 188 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC005520.5-201ENST00000613926 164 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AL161629.2-201ENST00000615347 275 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AL136228.1-201ENST00000622221 319 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 AC010329.2-201ENST00000595195 2737 ntBASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
PCDHB3Q9Y5E6 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 AC005224.3-201ENST00000584683 2140 ntBASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 AC125336.1-201ENST00000508893 2827 ntBASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHB3Q9Y5E6 RNU6-834P-201ENST00000362367 110 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms