Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIMD1Q9UGP4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 DEFB108F-201ENST00000344638 222 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 RNU1-43P-201ENST00000365052 165 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 RNU6-708P-201ENST00000384217 107 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 MIR514A1-201ENST00000385133 98 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 MIR190B-201ENST00000401119 79 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AL022722.2-201ENST00000402519 180 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AL603910.2-201ENST00000407268 136 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 RNU2-14P-201ENST00000411053 191 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AC093162.1-201ENST00000419682 124 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AL354766.1-201ENST00000423396 542 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 OR2AH1P-201ENST00000425717 928 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 MTND3P9-201ENST00000429526 346 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AC091286.1-201ENST00000431233 461 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AL627311.1-201ENST00000431514 115 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AL162739.1-201ENST00000450606 307 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 TOMM22P4-201ENST00000511318 336 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 RNU4-60P-201ENST00000517239 135 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AC104581.2-201ENST00000572227 430 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 AC116096.1-201ENST00000566804 2314 ntBASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.82□□□□□ -1.48
LIMD1Q9UGP4 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 Y_RNA.54-201ENST00000362766 105 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 Y_RNA.65-201ENST00000362846 100 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 U3.2-201ENST00000362981 210 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 SNORD50.1-201ENST00000362987 71 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 Y_RNA.200-201ENST00000364018 102 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 RPS29P13-201ENST00000402041 169 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 RNU2-33P-201ENST00000410344 192 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AL592148.1-201ENST00000413568 445 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 VTI1BP4-201ENST00000427516 527 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AL445305.1-201ENST00000432577 575 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 RPS20P22-201ENST00000473700 357 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 RPL23AP45-201ENST00000476406 468 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 RN7SL447P-201ENST00000494711 245 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AC104164.2-201ENST00000496953 495 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AK3P2-201ENST00000507976 429 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 RNU6-612P-201ENST00000516909 102 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 DEFB108E-201ENST00000524692 240 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AC008121.1-201ENST00000603244 268 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 Y_RNA.772-201ENST00000606692 102 ntBASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIMD1Q9UGP4 AC092070.2-203ENST00000598377 3644 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 RLIMP1-201ENST00000339626 1680 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 Y_RNA.150-201ENST00000363562 102 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 SNORD14B-201ENST00000364533 90 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 RNU6-378P-201ENST00000384324 107 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 RNY3P4-201ENST00000384428 101 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 SNORA19-201ENST00000384737 128 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 Y_RNA.623-201ENST00000411128 95 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 RN7SKP17-201ENST00000411242 351 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 AL358472.1-201ENST00000431295 329 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 BX679664.1-201ENST00000434429 253 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 OR6D1P-201ENST00000436165 939 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 TDGF1P1-201ENST00000445734 527 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 AC092647.2-201ENST00000452998 253 ntBASIC5.8□□□□□ -1.48
LIMD1Q9UGP4 ISCUP1-201ENST00000454451 448 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms