Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 RN7SL481P-201ENST00000477764 299 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 IGKV2-38-201ENST00000517443 247 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 AP001646.1-201ENST00000527936 915 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AP003034.1-201ENST00000534621 422 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 HMGB1P6-201ENST00000569046 646 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 MIR4474-201ENST00000579189 78 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 MIR3609-201ENST00000582661 80 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC104662.1-201ENST00000604448 511 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 MLECP1-201ENST00000615893 709 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC006338.2-201ENST00000616864 791 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC233309.1-201ENST00000619522 751 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 MIR6863-201ENST00000636112 90 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 U6.114-201ENST00000636407 96 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 MTND5P42-201ENST00000637720 498 ntBASIC4.33□□□□□ -1.72
DDX56Q9NY93 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
DDX56Q9NY93 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.33□□□□□ -1.72
DDX56Q9NY93 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DDX56Q9NY93 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
DDX56Q9NY93 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DDX56Q9NY93 UBE2L2-201ENST00000254302 429 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RNU6-74P-201ENST00000384235 107 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 Y_RNA.516-201ENST00000384541 124 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 MIR325-201ENST00000385260 98 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 SNORA3C-201ENST00000408792 125 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RNU4-25P-201ENST00000410569 230 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC011933.1-201ENST00000413334 321 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RPS3AP44-201ENST00000425466 790 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RPL23AP69-201ENST00000431134 458 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DDX56Q9NY93 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 DDX3P2-201ENST00000446138 111 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RNA5SP246-201ENST00000458909 119 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC116533.1-201ENST00000459748 321 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RPL9P33-201ENST00000484311 566 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RPL39P36-201ENST00000490784 156 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 HSPD1P15-201ENST00000505573 1122 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC108078.2-201ENST00000510750 236 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 RNU6-506P-201ENST00000516553 94 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC011602.1-201ENST00000546484 331 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
DDX56Q9NY93 TVP23BP1-201ENST00000557500 617 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 AL121992.2-201ENST00000606262 256 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC008536.2-201ENST00000607284 349 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AL359547.2-201ENST00000615810 418 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AL138880.2-201ENST00000616214 239 ntBASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DDX56Q9NY93 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DDX56Q9NY93 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.32□□□□□ -1.72
DDX56Q9NY93 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
DDX56Q9NY93 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
DDX56Q9NY93 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
DDX56Q9NY93 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 RNU1-132P-201ENST00000364300 164 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 Y_RNA.367-201ENST00000365544 101 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 RNU4-48P-201ENST00000365559 182 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 MIR454-201ENST00000390180 115 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 SOD2P1-201ENST00000396543 562 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 RNA5SP306-201ENST00000411087 107 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 HSPE1P12-201ENST00000412576 301 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 RPL23AP26-201ENST00000412728 464 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC080125.1-201ENST00000414888 684 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC092047.1-201ENST00000424997 240 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 ZNF863P-201ENST00000426746 417 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 CALM2P2-201ENST00000428512 440 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 MTATP6P16-201ENST00000434543 526 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 USP9YP28-201ENST00000435142 589 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
DDX56Q9NY93 HMGB3P11-201ENST00000440127 604 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 BNIP3P2-201ENST00000441221 577 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 SRRM1P2-201ENST00000464531 1192 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 RPS29P22-201ENST00000472363 168 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AF213884.1-201ENST00000488102 463 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC146944.2-203ENST00000502493 354 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC139783.2-201ENST00000504847 1145 ntBASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.31□□□□□ -1.72
DDX56Q9NY93 AC006445.2-201ENST00000510061 472 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 179.1 ms