Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SNORA20.2-201ENST00000383922 131 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 U3.20-201ENST00000390909 217 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 RNU11-4P-201ENST00000391149 133 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 RPS4XP8-201ENST00000402039 771 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC007390.1-201ENST00000415722 356 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 MTATP6P18-201ENST00000417994 673 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC019097.1-201ENST00000424783 735 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 UBE2V1P13-201ENST00000436983 439 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 HMGB3P12-201ENST00000438745 556 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC006011.1-201ENST00000442758 349 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 MTND1P11-201ENST00000456661 876 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 RN7SL132P-201ENST00000478131 296 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC021382.1-201ENST00000483523 359 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC055855.1-201ENST00000489563 579 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL132838.2-201ENST00000492041 314 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC008628.2-201ENST00000502605 298 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 RNU6-507P-201ENST00000516045 100 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 UBE2L4-201ENST00000587688 464 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 C8orf59P2-201ENST00000603441 271 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC007566.2-201ENST00000603642 413 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL009028.1-201ENST00000604895 802 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL592436.1-201ENST00000605135 558 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL391813.2-201ENST00000609113 322 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AL158801.5-201ENST00000623123 465 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 AC011460.1-201ENST00000636268 1834 ntBASIC4.15□□□□□ -1.75
DKK3Q9UBP4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
DKK3Q9UBP4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AL079305.1-201ENST00000623159 3008 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 RNU6-1097P-201ENST00000363586 107 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 RNU6-169P-201ENST00000365336 107 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 U1.1-201ENST00000384101 164 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 PTMAP5-201ENST00000393073 333 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 PPIAP31-201ENST00000405422 495 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 ARF4P2-201ENST00000430209 526 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC098614.3-201ENST00000438957 440 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC127537.2-201ENST00000439258 465 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 RNU6-420P-201ENST00000458780 107 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC083798.1-201ENST00000472671 131 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC078918.1-201ENST00000498515 228 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC091951.2-201ENST00000500762 203 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 RNU6-875P-201ENST00000516488 106 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AP003497.1-201ENST00000528472 562 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AP000907.2-201ENST00000530827 353 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 MIR3146-201ENST00000580367 79 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC010928.3-201ENST00000587712 541 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC005858.4-201ENST00000623191 700 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 AC079597.1-201ENST00000624306 508 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 MIR3662-201ENST00000637030 95 ntBASIC4.14□□□□□ -1.75
DKK3Q9UBP4 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
DKK3Q9UBP4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AL157700.1-201ENST00000561973 1432 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 SPRR2C-201ENST00000290702 219 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms