Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RPL35AP22-201ENST00000436855 335 ntBASIC1.23□□□□□ -2.21
COL12A1Q99715 VN1R96P-201ENST00000446052 858 ntBASIC1.23□□□□□ -2.21
COL12A1Q99715 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.23□□□□□ -2.21
COL12A1Q99715 SNRPFP3-201ENST00000457792 225 ntBASIC1.23□□□□□ -2.21
COL12A1Q99715 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.23□□□□□ -2.21
COL12A1Q99715 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.23□□□□□ -2.21
COL12A1Q99715 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.23□□□□□ -2.21
COL12A1Q99715 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL12A1Q99715 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.23□□□□□ -2.21
COL12A1Q99715 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.23□□□□□ -2.21
COL12A1Q99715 VN1R108P-201ENST00000431580 830 ntBASIC1.23□□□□□ -2.21
COL12A1Q99715 GTF2IP7-202ENST00000436677 309 ntBASIC1.23□□□□□ -2.21
COL12A1Q99715 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.23□□□□□ -2.21
COL12A1Q99715 SNORA31.26-201ENST00000517250 137 ntBASIC1.23□□□□□ -2.21
COL12A1Q99715 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.23□□□□□ -2.21
COL12A1Q99715 AC084364.2-201ENST00000546924 395 ntBASIC1.23□□□□□ -2.21
COL12A1Q99715 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.23□□□□□ -2.21
COL12A1Q99715 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.22□□□□□ -2.21
COL12A1Q99715 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.22□□□□□ -2.21
COL12A1Q99715 AL596028.1-201ENST00000326971 197 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.22□□□□□ -2.21
COL12A1Q99715 CYCSP48-201ENST00000417124 323 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.22□□□□□ -2.21
COL12A1Q99715 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.22□□□□□ -2.21
COL12A1Q99715 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.22□□□□□ -2.21
COL12A1Q99715 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.22□□□□□ -2.21
COL12A1Q99715 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.22□□□□□ -2.21
COL12A1Q99715 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.22□□□□□ -2.21
COL12A1Q99715 OR4K8P-201ENST00000578842 1048 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.22□□□□□ -2.21
COL12A1Q99715 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1.22□□□□□ -2.21
COL12A1Q99715 AC116447.1-201ENST00000613153 453 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC121761.2-201ENST00000617300 689 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
COL12A1Q99715 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
COL12A1Q99715 AL096701.2-201ENST00000416920 238 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AL691517.1-201ENST00000440833 1235 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC090453.1-201ENST00000495560 436 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC010265.1-201ENST00000513509 211 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AL109653.1-201ENST00000603091 248 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC090525.3-201ENST00000605601 189 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC006329.2-201ENST00000611491 394 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 AC007256.1-201ENST00000392253 2765 ntBASIC1.22□□□□□ -2.21
COL12A1Q99715 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.22□□□□□ -2.21
COL12A1Q99715 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
COL12A1Q99715 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.21
COL12A1Q99715 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.21□□□□□ -2.21
COL12A1Q99715 RNU6-716P-201ENST00000365621 103 ntBASIC1.21□□□□□ -2.21
COL12A1Q99715 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.21□□□□□ -2.21
COL12A1Q99715 AC092638.1-201ENST00000411966 1275 ntBASIC1.21□□□□□ -2.21
COL12A1Q99715 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.21□□□□□ -2.21
COL12A1Q99715 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.21□□□□□ -2.21
COL12A1Q99715 AC073901.1-201ENST00000462471 408 ntBASIC1.21□□□□□ -2.21
COL12A1Q99715 RNU1-40P-201ENST00000516816 164 ntBASIC1.21□□□□□ -2.21
COL12A1Q99715 RNU1-97P-201ENST00000516872 164 ntBASIC1.21□□□□□ -2.21
COL12A1Q99715 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC1.21□□□□□ -2.21
COL12A1Q99715 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.21□□□□□ -2.21
COL12A1Q99715 AC012493.3-201ENST00000604494 112 ntBASIC1.21□□□□□ -2.21
COL12A1Q99715 AC097468.3-201ENST00000607956 456 ntBASIC1.21□□□□□ -2.21
COL12A1Q99715 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
COL12A1Q99715 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.21□□□□□ -2.22
COL12A1Q99715 SNORA62.2-201ENST00000364672 152 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 MIR320A-201ENST00000385302 82 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.21□□□□□ -2.22
COL12A1Q99715 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.21□□□□□ -2.22
COL12A1Q99715 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.21□□□□□ -2.22
COL12A1Q99715 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.21□□□□□ -2.22
COL12A1Q99715 AC007229.1-201ENST00000590455 412 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 U6.98-201ENST00000637157 84 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 MIR6086-201ENST00000638065 55 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.21□□□□□ -2.22
COL12A1Q99715 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.21□□□□□ -2.22
COL12A1Q99715 XIAPP3-201ENST00000312918 795 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 HMGN2P35-201ENST00000412164 270 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.21□□□□□ -2.22
COL12A1Q99715 NEFMP1-201ENST00000443423 1006 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 AP000873.1-201ENST00000463987 400 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC1.21□□□□□ -2.22
COL12A1Q99715 MIR3660-201ENST00000584845 100 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 AC017076.1-201ENST00000607613 578 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 AC097504.2-201ENST00000608088 454 ntBASIC1.21□□□□□ -2.22
COL12A1Q99715 PABPC1P9-201ENST00000426076 1612 ntBASIC1.2□□□□□ -2.22
COL12A1Q99715 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
COL12A1Q99715 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.2□□□□□ -2.22
COL12A1Q99715 XIST-201ENST00000416330 750 ntTSL 2 BASIC1.2□□□□□ -2.22
COL12A1Q99715 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.2□□□□□ -2.22
COL12A1Q99715 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.2□□□□□ -2.22
COL12A1Q99715 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
COL12A1Q99715 DUXAP5-201ENST00000529668 529 ntBASIC1.2□□□□□ -2.22
COL12A1Q99715 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.2□□□□□ -2.22
COL12A1Q99715 AC012531.5-201ENST00000611375 151 ntBASIC1.2□□□□□ -2.22
COL12A1Q99715 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.2□□□□□ -2.22
COL12A1Q99715 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
COL12A1Q99715 RNU6-461P-201ENST00000364195 107 ntBASIC1.2□□□□□ -2.22
COL12A1Q99715 RPL31P35-201ENST00000431058 377 ntBASIC1.2□□□□□ -2.22
COL12A1Q99715 RPS27AP18-201ENST00000515536 459 ntBASIC1.2□□□□□ -2.22
COL12A1Q99715 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.2□□□□□ -2.22
COL12A1Q99715 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.2□□□□□ -2.22
COL12A1Q99715 AP000676.4-201ENST00000624659 623 ntBASIC1.2□□□□□ -2.22
COL12A1Q99715 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms