Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RN7SKP44-201ENST00000363602 316 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 SNORD35B-201ENST00000363660 87 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 RNU1-64P-201ENST00000365443 163 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 MIR1-2-201ENST00000384961 85 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 RNU6-1158P-201ENST00000391167 107 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 PPIAP31-201ENST00000405422 495 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 NEK4P1-201ENST00000433383 879 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 RPL36AP6-201ENST00000435770 321 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 SEPT14P3-201ENST00000439401 183 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 RPS15AP9-201ENST00000439856 381 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AL732372.2-207ENST00000445840 183 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 MTND3P10-201ENST00000450967 341 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 SEPT14P2-201ENST00000453405 183 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AL645939.1-201ENST00000453429 797 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC007537.2-201ENST00000472093 511 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC069439.1-201ENST00000494739 167 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 SEPT14P4-201ENST00000513445 186 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC026801.2-201ENST00000515352 425 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 SNORA40.12-201ENST00000516329 111 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 FO082796.1-201ENST00000523795 183 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 MIR5684-201ENST00000585074 65 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AL020991.1-201ENST00000612314 373 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 TUG1_2.1-201ENST00000614234 87 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AL136313.1-201ENST00000624804 202 ntBASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PTCHD3Q3KNS1 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC073343.1-201ENST00000328239 651 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 Y_RNA.22-201ENST00000362492 102 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RNY3P3-201ENST00000363816 102 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RN7SKP280-201ENST00000364196 304 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RNU4-48P-201ENST00000365559 182 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RNU5E-6P-201ENST00000365574 115 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RNU6-39P-201ENST00000384344 107 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RNU2-43P-201ENST00000410306 190 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC138393.2-201ENST00000414742 246 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 OR51A5P-201ENST00000415429 942 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AL109913.1-201ENST00000421173 514 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AL606489.2-201ENST00000433886 234 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC090774.1-201ENST00000435925 246 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AL162389.1-201ENST00000449233 177 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC126389.1-201ENST00000477436 290 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RPS26P15-201ENST00000488067 348 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC105417.1-201ENST00000514691 285 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 RNU6-835P-201ENST00000516974 104 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 FAM60DP-201ENST00000524174 632 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AL121579.1-201ENST00000555129 305 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC012182.1-201ENST00000570133 895 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC025627.2-201ENST00000576220 160 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 SNORD84-203ENST00000584275 78 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AL034351.1-201ENST00000605288 668 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 MIR6875-201ENST00000617506 72 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 SNHG22-203ENST00000617833 660 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AP003122.6-201ENST00000623831 495 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AL773545.4-201ENST00000637262 310 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 AL513478.4-201ENST00000641636 310 ntBASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PTCHD3Q3KNS1 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms