Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORA33.2-201ENST00000365413 134 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.395-201ENST00000383945 109 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.576-201ENST00000384781 102 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 EIF4E2P1-201ENST00000393781 255 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 SOD2P1-201ENST00000396543 562 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 RN7SKP158-201ENST00000410453 326 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 RPL37P10-201ENST00000412884 288 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC114491.1-201ENST00000416095 246 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 RPL7P10-201ENST00000417407 739 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 CKS1BP6-201ENST00000424932 240 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 Z82205.1-201ENST00000428456 297 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC234775.1-201ENST00000454247 670 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC004801.2-202ENST00000463559 283 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 RPL7P42-201ENST00000481005 679 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 RNU6-513P-201ENST00000516104 104 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 RNU6-566P-201ENST00000516790 107 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.711-201ENST00000516993 102 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AP003385.6-201ENST00000531603 374 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AL163153.1-201ENST00000554223 283 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC006270.2-201ENST00000578523 652 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 MIR4286-201ENST00000580651 93 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 MIR3942-201ENST00000585264 109 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 Z82243.1-201ENST00000609432 473 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 SNHG22-203ENST00000617833 660 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC015871.5-202ENST00000623252 701 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC112484.5-201ENST00000624189 228 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 XIAPP3-201ENST00000312918 795 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 RNU6-188P-201ENST00000364207 107 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.445-201ENST00000384168 102 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 MIR3065-201ENST00000390137 79 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AL080315.1-201ENST00000406055 466 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 MIR548F5-201ENST00000408421 86 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 CYCSP10-201ENST00000417973 294 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AL117339.2-201ENST00000430475 180 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 RPS20P1-201ENST00000434853 354 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 HMGB1P25-201ENST00000468402 607 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AL163540.1-201ENST00000485382 386 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 RPL23AP55-201ENST00000498163 452 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 CCDC34P1-201ENST00000507441 517 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 RNU6-1038P-201ENST00000516516 104 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AC090136.1-201ENST00000520009 240 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 BPIFA4P-203ENST00000603168 689 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AC079587.1-201ENST00000603846 277 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 MIR8059-201ENST00000620427 81 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 MTCO1P12-201ENST00000414273 1543 ntBASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC87Q9NVE4 AC090229.1-201ENST00000590983 1609 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 AC104623.2-202ENST00000623477 4002 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.146-201ENST00000363549 102 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.187-201ENST00000363918 113 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.216-201ENST00000364205 93 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 CYCSP19-201ENST00000411715 316 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 POLHP1-201ENST00000411806 470 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 RPL21P24-201ENST00000413752 448 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 RAC1P6-201ENST00000423911 575 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 FGF7P3-201ENST00000454645 303 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 RPL21P8-201ENST00000465083 535 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 RN7SL691P-201ENST00000494487 301 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 AC098591.2-201ENST00000510152 315 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 AC008958.1-201ENST00000511047 682 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 LIAS-206ENST00000513731 826 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 RNA5SP249-201ENST00000516127 99 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms