Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MIR1254-2-201ENST00000579553 63 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 HMGN1P30-201ENST00000589286 268 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AC004009.2-201ENST00000623016 728 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AL161781.1-201ENST00000354277 403 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RNA5SP258-201ENST00000362750 119 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RNU6-1181P-201ENST00000384191 106 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 MTCO3P40-201ENST00000392516 676 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 FCF1P10-201ENST00000407590 479 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 HMGB3P20-201ENST00000417997 600 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC245054.1-201ENST00000420944 258 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 PIGFP2-201ENST00000421400 651 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC018644.1-201ENST00000429934 551 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 GOT2P5-201ENST00000433995 546 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 MTND4LP10-201ENST00000435146 291 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RPL17P49-201ENST00000443728 411 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 FAM103A2P-201ENST00000444122 354 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC005297.2-201ENST00000450430 606 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC013267.1-201ENST00000458227 267 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 SNORA84-201ENST00000459229 133 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RPL31P13-201ENST00000484151 370 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC093677.1-201ENST00000514414 678 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RNU1-95P-201ENST00000516357 160 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RNA5SP309-201ENST00000516670 106 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 SNORA70.18-201ENST00000516696 98 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RNU1-128P-201ENST00000516704 160 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RNU2-46P-201ENST00000517038 113 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC118273.2-201ENST00000532092 465 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC068135.2-201ENST00000569293 1028 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC053481.3-201ENST00000577881 843 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 MIR548S-201ENST00000581352 82 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 CKS1BP3-201ENST00000600888 237 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 DUXAP4-201ENST00000603046 613 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AL390208.1-201ENST00000605885 644 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC092954.2-201ENST00000609103 430 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AL359880.1-201ENST00000621879 266 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC040168.1-201ENST00000623594 991 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AC110994.2-201ENST00000635481 492 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 AP000553.6-201ENST00000641242 118 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 CEP170P1-201ENST00000502249 4587 ntBASIC4.38□□□□□ -1.71
VPS53Q5VIR6 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS53Q5VIR6 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 Y_RNA.46-201ENST00000362695 102 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 RNU6-1249P-201ENST00000363237 111 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 SNORA51.2-201ENST00000364595 132 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 RNY4P34-201ENST00000364779 95 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 RNU4-12P-201ENST00000365233 139 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 SNORA5A-201ENST00000384111 134 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 SNORD115-47-201ENST00000391226 86 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 U3.29-201ENST00000391296 212 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 RPS3AP36-201ENST00000398190 775 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 MTHFD2P2-201ENST00000407725 247 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 Z98941.1-201ENST00000407764 100 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 MIR1277-201ENST00000408536 78 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 RNU6ATAC-201ENST00000408749 126 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 RHEBP3-201ENST00000411920 351 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC245052.5-201ENST00000416320 649 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 MTATP6P27-201ENST00000416987 621 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 DBIP2-201ENST00000419076 262 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC233728.2-201ENST00000425348 757 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 Z99127.3-201ENST00000448158 395 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC087312.1-201ENST00000471411 480 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC106872.2-201ENST00000494303 480 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 FCF1P3-201ENST00000496394 590 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC006390.1-201ENST00000508068 283 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 Y_RNA.672-201ENST00000516289 104 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms