Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG3P49916 AC022634.1-201ENST00000520765 532 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG3P49916 RGS4-209ENST00000531057 544 ntTSL 4 BASIC5.08□□□□□ -1.6
LIG3P49916 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG3P49916 MIR4458-201ENST00000578872 75 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AC069061.3-201ENST00000582254 823 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AC008737.2-201ENST00000599446 118 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG3P49916 AC024940.4-201ENST00000605507 246 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG3P49916 AL157817.1-201ENST00000614264 790 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AL138726.1-201ENST00000614873 333 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG3P49916 AC091905.4-201ENST00000623432 202 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
LIG3P49916 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIG3P49916 TLK1P1-201ENST00000456760 2440 ntBASIC5.08□□□□□ -1.6
LIG3P49916 ZNF519P1-201ENST00000449011 1626 ntBASIC5.08□□□□□ -1.6
LIG3P49916 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG3P49916 AC007823.1-201ENST00000569932 1566 ntBASIC5.08□□□□□ -1.6
LIG3P49916 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
LIG3P49916 AC068254.2-201ENST00000623938 3577 ntBASIC5.08□□□□□ -1.6
LIG3P49916 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIG3P49916 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIG3P49916 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
LIG3P49916 Y_RNA.135-201ENST00000363439 95 ntBASIC5.07□□□□□ -1.6
LIG3P49916 RNU6-593P-201ENST00000364716 112 ntBASIC5.07□□□□□ -1.6
LIG3P49916 SNORA2.3-201ENST00000383920 135 ntBASIC5.07□□□□□ -1.6
LIG3P49916 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
LIG3P49916 MIR550A3-201ENST00000390735 95 ntBASIC5.07□□□□□ -1.6
LIG3P49916 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG3P49916 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 BX323845.1-201ENST00000432417 179 ntBASIC5.07□□□□□ -1.6
LIG3P49916 AL591704.1-201ENST00000432574 275 ntBASIC5.07□□□□□ -1.6
LIG3P49916 MTND3P2-201ENST00000438452 342 ntBASIC5.07□□□□□ -1.6
LIG3P49916 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG3P49916 RPL32P28-201ENST00000443577 397 ntBASIC5.07□□□□□ -1.6
LIG3P49916 PTMAP3-201ENST00000447474 330 ntBASIC5.07□□□□□ -1.6
LIG3P49916 RPL7L1P1-201ENST00000448259 785 ntBASIC5.07□□□□□ -1.6
LIG3P49916 MRPS31P2-201ENST00000451581 518 ntBASIC5.07□□□□□ -1.6
LIG3P49916 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG3P49916 AP001086.1-201ENST00000494882 321 ntBASIC5.07□□□□□ -1.6
LIG3P49916 TBCAP3-201ENST00000512475 312 ntBASIC5.07□□□□□ -1.6
LIG3P49916 RNA5SP43-201ENST00000516559 110 ntBASIC5.07□□□□□ -1.6
LIG3P49916 Y_RNA.689-201ENST00000516589 107 ntBASIC5.07□□□□□ -1.6
LIG3P49916 RNU6-840P-201ENST00000517275 65 ntBASIC5.07□□□□□ -1.6
LIG3P49916 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC5.07□□□□□ -1.6
LIG3P49916 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG3P49916 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 OR4H12P-201ENST00000556269 907 ntBASIC5.07□□□□□ -1.6
LIG3P49916 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG3P49916 MIR4436B2-201ENST00000581415 91 ntBASIC5.07□□□□□ -1.6
LIG3P49916 MIR4436B1-201ENST00000583272 91 ntBASIC5.07□□□□□ -1.6
LIG3P49916 AC067852.3-201ENST00000589177 561 ntBASIC5.07□□□□□ -1.6
LIG3P49916 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG3P49916 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.07□□□□□ -1.6
LIG3P49916 AC136443.5-201ENST00000603741 370 ntBASIC5.07□□□□□ -1.6
LIG3P49916 AC007619.2-201ENST00000605743 379 ntBASIC5.07□□□□□ -1.6
LIG3P49916 uc_338.22-201ENST00000622722 187 ntBASIC5.07□□□□□ -1.6
LIG3P49916 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.07□□□□□ -1.6
LIG3P49916 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIG3P49916 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.07□□□□□ -1.6
LIG3P49916 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
LIG3P49916 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
LIG3P49916 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIG3P49916 INTS6P1-201ENST00000504674 2530 ntBASIC5.06□□□□□ -1.6
LIG3P49916 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.06□□□□□ -1.6
LIG3P49916 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
LIG3P49916 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.06□□□□□ -1.6
LIG3P49916 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LIG3P49916 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.06□□□□□ -1.6
LIG3P49916 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.06□□□□□ -1.6
LIG3P49916 RNA5SP428-201ENST00000365129 132 ntBASIC5.06□□□□□ -1.6
LIG3P49916 RNU6-715P-201ENST00000365204 103 ntBASIC5.06□□□□□ -1.6
LIG3P49916 CISD1P1-201ENST00000393907 327 ntBASIC5.06□□□□□ -1.6
LIG3P49916 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LIG3P49916 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.06□□□□□ -1.6
LIG3P49916 PDSS1P1-201ENST00000422953 1114 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.06□□□□□ -1.6
LIG3P49916 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.06□□□□□ -1.6
LIG3P49916 RPS26P2-201ENST00000440331 348 ntBASIC5.06□□□□□ -1.6
LIG3P49916 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC5.06□□□□□ -1.6
LIG3P49916 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC5.06□□□□□ -1.6
LIG3P49916 AL354714.3-201ENST00000447284 493 ntBASIC5.06□□□□□ -1.6
LIG3P49916 RPS11P1-201ENST00000451072 473 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AC091180.1-201ENST00000462104 372 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AC231760.1-201ENST00000498002 260 ntBASIC5.06□□□□□ -1.6
LIG3P49916 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LIG3P49916 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
LIG3P49916 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms