Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC104027.1-201ENST00000521887 300 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD4P09016 OR6C7P-201ENST00000547875 934 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AC024909.2-201ENST00000553035 286 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD4P09016 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXD4P09016 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC012414.6-201ENST00000568241 401 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AP001004.1-201ENST00000582468 324 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC073544.2-201ENST00000601155 540 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 RN7SKP299-201ENST00000606679 301 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AC009318.4-201ENST00000620496 486 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HOXD4P09016 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 MTCO1P23-201ENST00000415223 1526 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HOXD4P09016 FAM35CP-201ENST00000554755 2470 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXD4P09016 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD4P09016 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD4P09016 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXD4P09016 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD4P09016 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXD4P09016 RNU6-600P-201ENST00000362524 99 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RNU6-501P-201ENST00000364072 100 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RNU6-952P-201ENST00000391164 108 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RNU4-47P-201ENST00000410876 114 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RN7SKP142-201ENST00000411236 328 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RNU2-71P-201ENST00000411395 189 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD4P09016 CYCSP46-201ENST00000423569 204 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXD4P09016 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD4P09016 VDAC1P3-201ENST00000434069 851 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 HMGB1P12-201ENST00000438594 598 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AL512286.1-201ENST00000439244 400 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AL022578.1-201ENST00000439330 1433 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RPS24P6-201ENST00000452670 400 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 USP9YP34-201ENST00000453983 808 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RPL23AP67-201ENST00000465341 474 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD4P09016 AC090453.1-201ENST00000495560 436 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXD4P09016 HMGB1P22-201ENST00000505315 124 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 APOOP4-201ENST00000513530 597 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD4P09016 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC109635.4-202ENST00000531666 412 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD4P09016 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXD4P09016 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD4P09016 MIR4513-201ENST00000581077 86 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AC103987.3-201ENST00000582071 292 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 MIR4325-201ENST00000583049 90 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD4P09016 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC119751.7-201ENST00000600494 245 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD4P09016 AL590282.1-201ENST00000610379 1136 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
HOXD4P09016 AC073968.1-201ENST00000618594 637 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD4P09016 CYP3A51P-201ENST00000633513 256 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 AL645937.1-201ENST00000641739 1652 ntBASIC3.06□□□□□ -1.92
HOXD4P09016 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD4P09016 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD4P09016 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
HOXD4P09016 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD4P09016 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD4P09016 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD4P09016 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD4P09016 RPL23AP57-201ENST00000332361 466 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXD4P09016 RNU6-289P-201ENST00000364093 107 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 RNU6-343P-201ENST00000364709 104 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 SNORD116-4-201ENST00000384733 96 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 U3.26-201ENST00000391236 204 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 MTND4LP20-201ENST00000402379 270 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD4P09016 HMGB1P11-201ENST00000413899 637 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 TPMTP2-201ENST00000414372 726 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 TOMM22P1-201ENST00000418578 312 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 FNDC3CP-201ENST00000420795 1155 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD4P09016 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.05□□□□□ -1.92
HOXD4P09016 AL365184.2-201ENST00000431139 435 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD4P09016 AL353706.1-201ENST00000436728 494 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 RPL23AP74-201ENST00000437246 471 ntBASIC3.05□□□□□ -1.92
HOXD4P09016 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms