Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
DDX41Q9UJV9 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
DDX41Q9UJV9 AC092326.2-201ENST00000624772 1561 ntBASIC5.2□□□□□ -1.58
DDX41Q9UJV9 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.2□□□□□ -1.58
DDX41Q9UJV9 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
DDX41Q9UJV9 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 Y_RNA.100-201ENST00000363141 102 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AL356387.2-201ENST00000422272 243 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 MTCO3P46-201ENST00000425787 232 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AMD1P1-201ENST00000457220 922 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 HMGN2P26-201ENST00000463169 339 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC104806.1-201ENST00000508720 308 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC093840.1-201ENST00000511599 336 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 Y_RNA.675-201ENST00000516389 149 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 MTND4P7-201ENST00000523876 130 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 RANP3-201ENST00000530970 276 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC087241.2-201ENST00000535801 324 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC078814.3-201ENST00000553036 491 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 BNIP3P5-201ENST00000562290 498 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC024619.4-201ENST00000580924 316 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC006116.10-201ENST00000591836 581 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AL022099.1-201ENST00000604551 712 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC090617.10-201ENST00000624308 134 ntBASIC5.19□□□□□ -1.58
DDX41Q9UJV9 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.19□□□□□ -1.58
DDX41Q9UJV9 AC004925.1-201ENST00000624256 2706 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RNA5SP509-201ENST00000364577 119 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 SNORD81.2-201ENST00000365153 76 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RHOT1P2-201ENST00000366423 333 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RNU6-701P-201ENST00000384059 107 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RNU4-46P-201ENST00000410818 138 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 NCOR1P3-201ENST00000420479 303 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC244098.2-201ENST00000422068 99 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC093106.2-201ENST00000428212 385 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AL353748.1-201ENST00000440753 474 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AL162395.1-201ENST00000457882 422 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RPL21P126-201ENST00000470049 478 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 VN1R105P-201ENST00000486595 910 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC083829.1-201ENST00000503756 657 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RNU6-1314P-201ENST00000517139 104 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 IGLV3-26-201ENST00000520756 302 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC100770.1-201ENST00000532310 322 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC012182.1-201ENST00000570133 895 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RPS3AP23-202ENST00000574601 686 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC243960.4-201ENST00000600532 288 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 RNU6-89P-201ENST00000606519 100 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 uc_338.5-201ENST00000611839 155 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 SDR42E1P2-201ENST00000614861 481 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC068831.8-201ENST00000620171 435 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC007998.5-201ENST00000622938 237 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AC011944.2-201ENST00000624440 683 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.18□□□□□ -1.58
DDX41Q9UJV9 AL136164.3-201ENST00000624429 3978 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.18□□□□□ -1.58
DDX41Q9UJV9 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.17□□□□□ -1.58
DDX41Q9UJV9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
DDX41Q9UJV9 MAPK10-303ENST00000641324 3959 ntBASIC5.17□□□□□ -1.58
DDX41Q9UJV9 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.17□□□□□ -1.58
DDX41Q9UJV9 AL445487.1-201ENST00000415694 1580 ntBASIC5.17□□□□□ -1.58
DDX41Q9UJV9 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
DDX41Q9UJV9 AL136964.1-201ENST00000622038 2990 ntBASIC5.17□□□□□ -1.58
DDX41Q9UJV9 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms