Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-38P-201ENST00000384085 107 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AL592114.1-201ENST00000403842 483 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 RPL30P2-201ENST00000414021 291 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 RNU6-333P-201ENST00000459117 107 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 RPS27AP13-201ENST00000498403 237 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC021146.3-201ENST00000511911 260 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 SNORA31.22-201ENST00000517204 135 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 RNF138P2-201ENST00000603490 592 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AL138889.2-201ENST00000603883 242 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AL365204.3-201ENST00000612448 685 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC012409.4-201ENST00000612923 249 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AL390240.1-201ENST00000612950 384 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AL359547.2-201ENST00000615810 418 ntBASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.55□□□□□ -1.68
TRIM39Q9HCM9 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AL592182.3-201ENST00000642132 3304 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RNU5A-1-201ENST00000362698 116 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RNA5SP28-201ENST00000363841 119 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RNU4-20P-201ENST00000365601 151 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RNU6-629P-201ENST00000384061 103 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC018630.2-202ENST00000422992 927 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 KCTD9P3-201ENST00000434597 1169 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RPS26P2-201ENST00000440331 348 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ARL2BPP10-201ENST00000446487 531 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC020550.1-201ENST00000447385 163 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AL445433.1-201ENST00000457507 257 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC110792.1-201ENST00000491826 472 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC106872.2-201ENST00000494303 480 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC111000.3-201ENST00000508057 576 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RN7SKP258-201ENST00000517151 304 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AP006587.4-201ENST00000526053 529 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AP001781.1-201ENST00000530977 207 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 PSMA3P-201ENST00000555485 635 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AL355836.1-201ENST00000555951 870 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC128687.2-201ENST00000609657 566 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AC004696.1-201ENST00000614345 607 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AL360181.4-201ENST00000621752 134 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AL357559.1-201ENST00000622228 274 ntBASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TRIM39Q9HCM9 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 MTND4P35-201ENST00000604257 1375 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 SNORD81.2-201ENST00000365153 76 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 RNA5SP332-201ENST00000391063 115 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 RNU6-817P-201ENST00000391083 104 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms