Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ARL2BPP4-201ENST00000506854 471 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.81□□□□□ -1.8
HDAC4P56524 AC116347.2-201ENST00000514912 523 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 PAICSP4-201ENST00000517543 1253 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.81□□□□□ -1.8
HDAC4P56524 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.81□□□□□ -1.8
HDAC4P56524 AC091965.4-201ENST00000607691 587 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.81□□□□□ -1.8
HDAC4P56524 SNORA50A-202ENST00000629536 136 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.81□□□□□ -1.8
HDAC4P56524 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HDAC4P56524 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HDAC4P56524 TEX21P-201ENST00000447107 1476 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC073073.2-201ENST00000609827 2578 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.8□□□□□ -1.8
HDAC4P56524 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HDAC4P56524 RNA5SP51-201ENST00000364750 119 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 SNORA9-201ENST00000384215 133 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 RNU6-809P-201ENST00000384461 107 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 MTCO3P41-201ENST00000414801 328 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AC245054.1-201ENST00000420944 258 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.8□□□□□ -1.8
HDAC4P56524 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.8□□□□□ -1.8
HDAC4P56524 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.8□□□□□ -1.8
HDAC4P56524 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.8□□□□□ -1.8
HDAC4P56524 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.8□□□□□ -1.8
HDAC4P56524 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HDAC4P56524 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.8□□□□□ -1.8
HDAC4P56524 PHBP14-201ENST00000512887 367 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.8□□□□□ -1.8
HDAC4P56524 AP003033.1-201ENST00000527244 415 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.8□□□□□ -1.8
HDAC4P56524 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HDAC4P56524 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.8□□□□□ -1.8
HDAC4P56524 MIR4298-201ENST00000584380 73 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 UBE2L4-201ENST00000587688 464 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AC078795.2-201ENST00000602835 1252 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AC012669.1-201ENST00000603209 283 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.8□□□□□ -1.8
HDAC4P56524 SNORA51-201ENST00000606420 132 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC099778.2-201ENST00000610904 211 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AL592295.2-201ENST00000612578 206 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AL121772.2-201ENST00000614331 297 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AL590099.1-201ENST00000615276 138 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AL356585.4-201ENST00000623078 1229 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AL158801.5-201ENST00000623123 465 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.8□□□□□ -1.8
HDAC4P56524 AC099654.13-201ENST00000639774 207 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 AC119674.1-207ENST00000641355 633 ntBASIC3.8□□□□□ -1.8
HDAC4P56524 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HDAC4P56524 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDAC4P56524 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HDAC4P56524 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDAC4P56524 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDAC4P56524 AL353746.1-201ENST00000566293 6881 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HDAC4P56524 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HDAC4P56524 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.79□□□□□ -1.8
HDAC4P56524 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDAC4P56524 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.79□□□□□ -1.8
HDAC4P56524 RNU6-50P-201ENST00000362356 103 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 RNU6-283P-201ENST00000364788 107 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.79□□□□□ -1.8
HDAC4P56524 RNU6-1074P-201ENST00000383995 104 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 MIR591-201ENST00000385290 95 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HDAC4P56524 RNA5SP129-201ENST00000410276 118 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 RNU6-248P-201ENST00000410720 107 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.79□□□□□ -1.8
HDAC4P56524 AC099677.1-201ENST00000420575 175 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.79□□□□□ -1.8
HDAC4P56524 AC108734.1-201ENST00000439549 399 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 AC092641.1-201ENST00000440229 772 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 AL662791.1-201ENST00000441992 928 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 FAM103A2P-201ENST00000444122 354 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.79□□□□□ -1.8
HDAC4P56524 SSXP1-201ENST00000453640 473 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 AC021382.1-201ENST00000483523 359 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.79□□□□□ -1.8
HDAC4P56524 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.79□□□□□ -1.8
HDAC4P56524 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.79□□□□□ -1.8
HDAC4P56524 AC010265.1-201ENST00000513509 211 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.79□□□□□ -1.8
HDAC4P56524 MTND4LP18-201ENST00000526864 291 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 AP003497.1-201ENST00000528472 562 ntBASIC3.79□□□□□ -1.8
HDAC4P56524 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.79□□□□□ -1.8
HDAC4P56524 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.79□□□□□ -1.8
HDAC4P56524 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms