Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCNG2P1-201ENST00000549521 1000 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXA1P49639 AC025627.2-201ENST00000576220 160 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 MIR5684-201ENST00000585074 65 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXA1P49639 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXA1P49639 AC245014.2-201ENST00000603689 287 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 AL391646.1-201ENST00000603860 190 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 AC067959.1-201ENST00000604334 379 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 AC246785.4-201ENST00000605374 287 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 AC007038.2-201ENST00000608095 740 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 AC245517.5-201ENST00000611529 162 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXA1P49639 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA1P49639 MTND5P3-201ENST00000438536 1800 ntBASIC3.26□□□□□ -1.89
HOXA1P49639 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA1P49639 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA1P49639 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA1P49639 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA1P49639 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA1P49639 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA1P49639 SNORA60-201ENST00000362396 134 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 RNU6-1090P-201ENST00000364065 94 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 RNU4-12P-201ENST00000365233 139 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 MTCO3P40-201ENST00000392516 676 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AC068050.1-201ENST00000394891 380 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AL391417.1-201ENST00000404100 426 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 HSPE1P26-201ENST00000405341 275 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 BTF3P7-201ENST00000407097 488 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 PIGFP2-201ENST00000421400 651 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 EIF1P1-201ENST00000421436 341 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC133104.1-201ENST00000429100 218 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA1P49639 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC006011.1-201ENST00000442758 349 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 MRPS31P2-201ENST00000451581 518 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC126182.1-201ENST00000478134 357 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 RPS4XP22-201ENST00000480755 780 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AC092989.1-201ENST00000481235 277 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC109927.2-201ENST00000506416 303 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AC008958.1-201ENST00000511047 682 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA1P49639 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA1P49639 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC087481.2-201ENST00000565492 330 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA1P49639 MIR4738-201ENST00000579134 87 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 COX6CP3-201ENST00000580869 223 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 MIR4801-201ENST00000582704 82 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA1P49639 NRBF2P1-201ENST00000587407 859 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 IGHV3-29-201ENST00000604817 344 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA1P49639 AC090517.2-201ENST00000614966 680 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 AC048347.1-201ENST00000624621 427 ntBASIC3.25□□□□□ -1.89
HOXA1P49639 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA1P49639 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA1P49639 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA1P49639 AC244517.1-201ENST00000606030 2086 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA1P49639 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 OR1S2-201ENST00000302592 978 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 RNU5A-8P-201ENST00000364102 114 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 Y_RNA.248-201ENST00000364501 109 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 SNORA73.2-201ENST00000364946 201 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXA1P49639 AC011933.1-201ENST00000413334 321 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA1P49639 ELOCP4-201ENST00000420090 333 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AL353193.1-201ENST00000421444 268 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA1P49639 COX6B1P7-201ENST00000430845 235 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 MRPS10P2-201ENST00000431226 381 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA1P49639 RPS15AP9-201ENST00000439856 381 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 RPS4XP4-201ENST00000443195 763 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 HMGN2P21-201ENST00000447764 270 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 NPM1P49-201ENST00000448027 714 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA1P49639 MTND1P12-201ENST00000455231 147 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA1P49639 UBDP1-202ENST00000457888 382 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 AC116533.1-201ENST00000459748 321 ntBASIC3.24□□□□□ -1.89
HOXA1P49639 RN7SL442P-201ENST00000473804 320 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms