Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.43□□□□□ -1.86
MSH3P20585 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
MSH3P20585 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
MSH3P20585 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.43□□□□□ -1.86
MSH3P20585 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.43□□□□□ -1.86
MSH3P20585 RNU6-27P-201ENST00000516146 107 ntBASIC3.43□□□□□ -1.86
MSH3P20585 SNORA70.19-201ENST00000516717 90 ntBASIC3.43□□□□□ -1.86
MSH3P20585 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.43□□□□□ -1.86
MSH3P20585 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.43□□□□□ -1.86
MSH3P20585 AC090615.1-201ENST00000577519 154 ntBASIC3.43□□□□□ -1.86
MSH3P20585 AC005771.1-201ENST00000585581 349 ntBASIC3.43□□□□□ -1.86
MSH3P20585 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.43□□□□□ -1.86
MSH3P20585 AC006557.5-201ENST00000603126 811 ntBASIC3.43□□□□□ -1.86
MSH3P20585 AC008739.3-201ENST00000603262 127 ntBASIC3.43□□□□□ -1.86
MSH3P20585 AC006329.2-201ENST00000611491 394 ntBASIC3.43□□□□□ -1.86
MSH3P20585 AL603839.4-201ENST00000624658 1005 ntBASIC3.43□□□□□ -1.86
MSH3P20585 CRYM-AS1-204ENST00000637983 556 ntBASIC3.43□□□□□ -1.86
MSH3P20585 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.43□□□□□ -1.86
MSH3P20585 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.43□□□□□ -1.86
MSH3P20585 CCT4P2-201ENST00000233836 1548 ntBASIC3.43□□□□□ -1.86
MSH3P20585 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSH3P20585 AC092447.10-201ENST00000620607 1652 ntBASIC3.43□□□□□ -1.86
MSH3P20585 AL645937.1-201ENST00000641739 1652 ntBASIC3.43□□□□□ -1.86
MSH3P20585 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSH3P20585 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH3P20585 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
MSH3P20585 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSH3P20585 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
MSH3P20585 RNU4-35P-201ENST00000362588 141 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RNA5SP50-201ENST00000363731 107 ntBASIC3.42□□□□□ -1.86
MSH3P20585 Y_RNA.234-201ENST00000364409 97 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RNU6-335P-201ENST00000364563 113 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RNA5SP189-201ENST00000364920 115 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RNU6-1119P-201ENST00000384349 108 ntBASIC3.42□□□□□ -1.86
MSH3P20585 EI24P2-201ENST00000397776 1076 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RPS15AP6-201ENST00000420703 385 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RPL31P12-201ENST00000422587 358 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AL356583.2-201ENST00000426536 280 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AP000907.1-201ENST00000428428 510 ntBASIC3.42□□□□□ -1.86
MSH3P20585 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH3P20585 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH3P20585 RPL7P52-201ENST00000449200 742 ntBASIC3.42□□□□□ -1.86
MSH3P20585 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH3P20585 CYCSP35-201ENST00000451978 304 ntBASIC3.42□□□□□ -1.86
MSH3P20585 MTCO1P42-201ENST00000457379 726 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RPS4XP10-201ENST00000465034 731 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AC021205.2-201ENST00000480069 347 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AP001025.2-201ENST00000490908 477 ntBASIC3.42□□□□□ -1.86
MSH3P20585 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
MSH3P20585 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH3P20585 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH3P20585 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
MSH3P20585 RNU6-714P-201ENST00000516963 103 ntBASIC3.42□□□□□ -1.86
MSH3P20585 MTND4LP18-201ENST00000526864 291 ntBASIC3.42□□□□□ -1.86
MSH3P20585 OR5D17P-201ENST00000531492 978 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AP003385.6-201ENST00000531603 374 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH3P20585 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.42□□□□□ -1.86
MSH3P20585 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH3P20585 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH3P20585 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH3P20585 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH3P20585 AL669831.4-202ENST00000590817 238 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH3P20585 AC091965.4-201ENST00000607691 587 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AC104073.3-201ENST00000610942 955 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH3P20585 AC040168.1-201ENST00000623594 991 ntBASIC3.42□□□□□ -1.86
MSH3P20585 AC048347.1-201ENST00000624621 427 ntBASIC3.42□□□□□ -1.86
MSH3P20585 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSH3P20585 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
MSH3P20585 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSH3P20585 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
MSH3P20585 TEX21P-201ENST00000447107 1476 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC093908.1-201ENST00000623125 8092 ntBASIC3.41□□□□□ -1.86
MSH3P20585 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.41□□□□□ -1.86
MSH3P20585 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
MSH3P20585 AC032011.1-201ENST00000611703 1549 ntBASIC3.41□□□□□ -1.86
MSH3P20585 ZNF826P-207ENST00000622273 1910 ntBASIC3.41□□□□□ -1.86
MSH3P20585 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSH3P20585 RNY4P24-201ENST00000362735 96 ntBASIC3.41□□□□□ -1.86
MSH3P20585 RNA5SP258-201ENST00000362750 119 ntBASIC3.41□□□□□ -1.86
MSH3P20585 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.41□□□□□ -1.86
MSH3P20585 RNU6-533P-201ENST00000384144 107 ntBASIC3.41□□□□□ -1.86
MSH3P20585 SNORD51-201ENST00000384320 80 ntBASIC3.41□□□□□ -1.86
MSH3P20585 RNU6-809P-201ENST00000384461 107 ntBASIC3.41□□□□□ -1.86
MSH3P20585 MIR23B-201ENST00000384832 97 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC007899.1-201ENST00000412776 775 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC245052.5-201ENST00000416320 649 ntBASIC3.41□□□□□ -1.86
MSH3P20585 TOMM22P1-201ENST00000418578 312 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH3P20585 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.41□□□□□ -1.86
MSH3P20585 AC006548.1-201ENST00000427470 102 ntBASIC3.41□□□□□ -1.86
MSH3P20585 SETP5-201ENST00000437270 562 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AL031667.1-201ENST00000440222 725 ntBASIC3.41□□□□□ -1.86
MSH3P20585 FAM103A2P-201ENST00000444122 354 ntBASIC3.41□□□□□ -1.86
MSH3P20585 USP9YP12-201ENST00000450481 570 ntBASIC3.41□□□□□ -1.86
MSH3P20585 AL353691.1-201ENST00000451332 387 ntBASIC3.41□□□□□ -1.86
MSH3P20585 RBMY2UP-201ENST00000453474 324 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms