Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CTCFP49711 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 AC004925.1-201ENST00000624256 2706 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AC002546.1-201ENST00000588041 2504 ntBASIC4□□□□□ -1.77
CTCFP49711 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4□□□□□ -1.77
CTCFP49711 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CTCFP49711 RNU6-28P-201ENST00000362378 107 ntBASIC4□□□□□ -1.77
CTCFP49711 RNU6-600P-201ENST00000362524 99 ntBASIC4□□□□□ -1.77
CTCFP49711 RNA5SP197-201ENST00000363357 119 ntBASIC4□□□□□ -1.77
CTCFP49711 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4□□□□□ -1.77
CTCFP49711 AC007899.1-201ENST00000412776 775 ntBASIC4□□□□□ -1.77
CTCFP49711 AC092447.6-201ENST00000414578 210 ntBASIC4□□□□□ -1.77
CTCFP49711 RPL23AP39-201ENST00000415533 405 ntBASIC4□□□□□ -1.77
CTCFP49711 AL513477.1-202ENST00000417061 214 ntBASIC4□□□□□ -1.77
CTCFP49711 AIMP1P1-201ENST00000418670 937 ntBASIC4□□□□□ -1.77
CTCFP49711 VDAC1P3-201ENST00000434069 851 ntBASIC4□□□□□ -1.77
CTCFP49711 SDCBPP1-201ENST00000440192 890 ntBASIC4□□□□□ -1.77
CTCFP49711 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4□□□□□ -1.77
CTCFP49711 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4□□□□□ -1.77
CTCFP49711 EEF1B2P7-201ENST00000451177 676 ntBASIC4□□□□□ -1.77
CTCFP49711 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4□□□□□ -1.77
CTCFP49711 RPL30P6-201ENST00000475925 342 ntBASIC4□□□□□ -1.77
CTCFP49711 AC072039.1-201ENST00000477611 581 ntBASIC4□□□□□ -1.77
CTCFP49711 FAM172BP-201ENST00000487497 1089 ntBASIC4□□□□□ -1.77
CTCFP49711 HMGB1P36-201ENST00000487709 576 ntBASIC4□□□□□ -1.77
CTCFP49711 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC4□□□□□ -1.77
CTCFP49711 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC4□□□□□ -1.77
CTCFP49711 AC093809.1-201ENST00000509155 340 ntBASIC4□□□□□ -1.77
CTCFP49711 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4□□□□□ -1.77
CTCFP49711 RNA5SP208-201ENST00000516156 78 ntBASIC4□□□□□ -1.77
CTCFP49711 AC087373.1-201ENST00000524920 491 ntBASIC4□□□□□ -1.77
CTCFP49711 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4□□□□□ -1.77
CTCFP49711 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4□□□□□ -1.77
CTCFP49711 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CTCFP49711 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4□□□□□ -1.77
CTCFP49711 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4□□□□□ -1.77
CTCFP49711 AC007954.1-201ENST00000554198 494 ntBASIC4□□□□□ -1.77
CTCFP49711 AC090877.1-201ENST00000561418 344 ntBASIC4□□□□□ -1.77
CTCFP49711 AC099489.2-201ENST00000574976 260 ntBASIC4□□□□□ -1.77
CTCFP49711 AC011260.1-201ENST00000578420 472 ntBASIC4□□□□□ -1.77
CTCFP49711 MIR5047-201ENST00000579212 100 ntBASIC4□□□□□ -1.77
CTCFP49711 AC008088.1-201ENST00000580993 280 ntBASIC4□□□□□ -1.77
CTCFP49711 AC011468.4-201ENST00000603942 409 ntBASIC4□□□□□ -1.77
CTCFP49711 AC010738.1-201ENST00000604970 987 ntBASIC4□□□□□ -1.77
CTCFP49711 AC090186.1-201ENST00000605991 572 ntBASIC4□□□□□ -1.77
CTCFP49711 AC122133.1-201ENST00000613964 233 ntBASIC4□□□□□ -1.77
CTCFP49711 AC018755.4-201ENST00000619715 454 ntBASIC4□□□□□ -1.77
CTCFP49711 MIR7111-201ENST00000619751 72 ntBASIC4□□□□□ -1.77
CTCFP49711 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4□□□□□ -1.77
CTCFP49711 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CTCFP49711 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4□□□□□ -1.77
CTCFP49711 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
CTCFP49711 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4□□□□□ -1.77
CTCFP49711 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
CTCFP49711 FAM35BP-202ENST00000497389 3337 ntBASIC4□□□□□ -1.77
CTCFP49711 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 AC006504.1-201ENST00000562493 3666 ntBASIC3.99□□□□□ -1.77
CTCFP49711 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 RNU6-1249P-201ENST00000363237 111 ntBASIC3.99□□□□□ -1.77
CTCFP49711 RNU6-660P-201ENST00000364566 109 ntBASIC3.99□□□□□ -1.77
CTCFP49711 RNU6-629P-201ENST00000384061 103 ntBASIC3.99□□□□□ -1.77
CTCFP49711 HLFP1-201ENST00000402375 499 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AL590103.1-201ENST00000434488 307 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AL353691.1-201ENST00000451332 387 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AC004801.2-202ENST00000463559 283 ntBASIC3.99□□□□□ -1.77
CTCFP49711 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CTCFP49711 AC084198.1-201ENST00000477747 402 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.99□□□□□ -1.77
CTCFP49711 BET1P1-201ENST00000482276 359 ntBASIC3.99□□□□□ -1.77
CTCFP49711 RPF2P2-201ENST00000504693 896 ntBASIC3.99□□□□□ -1.77
CTCFP49711 COX7A2P2-201ENST00000505291 250 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AC024589.1-201ENST00000512207 263 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.99□□□□□ -1.77
CTCFP49711 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.99□□□□□ -1.77
CTCFP49711 AC109446.2-201ENST00000567872 497 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.99□□□□□ -1.77
CTCFP49711 MIR4425-201ENST00000580572 84 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AL353997.4-201ENST00000586196 166 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.99□□□□□ -1.77
CTCFP49711 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.99□□□□□ -1.77
CTCFP49711 AL109653.1-201ENST00000603091 248 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AC006557.5-201ENST00000603126 811 ntBASIC3.99□□□□□ -1.77
CTCFP49711 BRDTP1-201ENST00000605735 677 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.99□□□□□ -1.77
CTCFP49711 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 AP001148.1-201ENST00000624124 2359 ntBASIC3.99□□□□□ -1.77
CTCFP49711 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.99□□□□□ -1.77
CTCFP49711 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.99□□□□□ -1.77
CTCFP49711 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CTCFP49711 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CTCFP49711 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CTCFP49711 AL049780.3-201ENST00000624612 1583 ntBASIC3.98□□□□□ -1.77
CTCFP49711 MAPK10-373ENST00000641983 6772 ntBASIC3.98□□□□□ -1.77
CTCFP49711 AC244517.1-201ENST00000606030 2086 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms