Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC010733.2-201ENST00000589496 5702 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4BO75351 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4BO75351 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4BO75351 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4BO75351 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4BO75351 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4BO75351 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
VPS4BO75351 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4BO75351 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4BO75351 Y_RNA.38-201ENST00000362617 102 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNU6-511P-201ENST00000363496 107 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNY3P3-201ENST00000363816 102 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RN7SKP280-201ENST00000364196 304 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 U3.11-201ENST00000364476 212 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNU6-1078P-201ENST00000364522 103 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNA5SP366-201ENST00000365454 123 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNU6-877P-201ENST00000383868 107 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNU1-13P-201ENST00000384499 162 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNU6-754P-201ENST00000391166 107 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNU6-1158P-201ENST00000391167 107 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RPS3AP24-201ENST00000407896 734 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 MIR1179-201ENST00000408703 91 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 RPL7P2-201ENST00000427639 268 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4BO75351 OR4C10P-201ENST00000434991 931 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 HMGB3P12-201ENST00000438745 556 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4BO75351 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4BO75351 RPL35AP15-201ENST00000468042 339 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AC108475.1-201ENST00000507880 950 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 SNORA40.12-201ENST00000516329 111 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 IGKV2-23-201ENST00000518729 323 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AP003730.1-201ENST00000524605 285 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4BO75351 CR383656.7-201ENST00000548164 174 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4BO75351 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4BO75351 HMGB1P6-201ENST00000569046 646 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4BO75351 MIR3158-1-201ENST00000583596 81 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 GLUD1P4-201ENST00000590914 418 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 AL049634.3-201ENST00000604968 457 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 AL591034.3-201ENST00000605511 685 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 AC233309.1-201ENST00000619522 751 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 MIR3653-201ENST00000625572 110 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 RNA5SP196-201ENST00000625967 102 ntBASIC4.16□□□□□ -1.74
VPS4BO75351 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS4BO75351 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4BO75351 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4BO75351 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.15□□□□□ -1.74
VPS4BO75351 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4BO75351 CASC19-280ENST00000642102 1351 ntBASIC4.15□□□□□ -1.74
VPS4BO75351 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
VPS4BO75351 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4BO75351 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4BO75351 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS4BO75351 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
VPS4BO75351 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
VPS4BO75351 AC068050.1-201ENST00000394891 380 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS4BO75351 AC092447.6-201ENST00000414578 210 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 MRPL50P2-201ENST00000416821 482 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS4BO75351 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS4BO75351 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS4BO75351 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS4BO75351 AC016696.1-201ENST00000446949 318 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AC010655.1-201ENST00000449336 292 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 RNU6-261P-201ENST00000459506 102 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 RN7SL98P-201ENST00000462271 300 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS4BO75351 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS4BO75351 AC139783.2-201ENST00000504847 1145 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 HSPD1P15-201ENST00000505573 1122 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS4BO75351 AC008549.1-201ENST00000512900 643 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 SNORD27.1-201ENST00000516319 72 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 Y_RNA.702-201ENST00000516843 96 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 RNU6-410P-201ENST00000517006 107 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 RNU4-60P-201ENST00000517239 135 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS4BO75351 AC090281.1-201ENST00000523019 276 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AF235103.2-201ENST00000525753 346 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AP001646.1-201ENST00000527936 915 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 OR5BN1P-201ENST00000532955 829 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS4BO75351 ADI1P3-201ENST00000549509 470 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS4BO75351 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms