Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PRPF39Q86UA1 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PRPF39Q86UA1 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PRPF39Q86UA1 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 FRG1CP-201ENST00000358464 769 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 RNU6-433P-201ENST00000363216 104 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 Y_RNA.302-201ENST00000364997 102 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 SNORA1.3-201ENST00000384676 136 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 MIR491-201ENST00000384877 84 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 MIR483-201ENST00000385070 76 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 RNU1-101P-201ENST00000391171 127 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 SKINT1L-201ENST00000401057 817 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AL590084.2-201ENST00000401481 382 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AL359704.1-201ENST00000411586 781 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 MTND1P20-201ENST00000430341 950 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC092573.2-201ENST00000434546 243 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 NDUFB4P6-201ENST00000436819 366 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AL359385.1-201ENST00000456509 365 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC010401.1-201ENST00000463867 348 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 RPS4XP22-201ENST00000480755 780 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 LINC00888-204ENST00000487386 421 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 SNORA31.22-201ENST00000517204 135 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AP004247.1-201ENST00000531556 1289 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AL133271.1-201ENST00000538229 291 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC007458.1-201ENST00000542812 373 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 OR7K1P-201ENST00000546439 926 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC021755.1-201ENST00000559747 1447 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 ZNF415P1-201ENST00000582279 1166 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AP000811.1-201ENST00000603803 651 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AL031667.3-201ENST00000620124 655 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC019226.1-201ENST00000625666 515 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC008993.2-201ENST00000631744 806 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 AC011460.1-201ENST00000636268 1834 ntBASIC3.57□□□□□ -1.84
PRPF39Q86UA1 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PRPF39Q86UA1 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 MTND4P16-201ENST00000466108 1367 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 RNU6-525P-201ENST00000363685 104 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 RNA5SP267-201ENST00000364893 126 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 SNORA9-201ENST00000384215 133 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 MIR490-201ENST00000384865 128 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 RNU6-1077P-201ENST00000410506 102 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 MTND1P21-201ENST00000412991 285 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AL158156.1-201ENST00000422509 473 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AC018630.2-202ENST00000422992 927 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 BX679664.1-201ENST00000434429 253 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 RPL35AP22-201ENST00000436855 335 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 RSU1P2-202ENST00000437884 485 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AL590664.1-201ENST00000448065 339 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 OR6C5P-201ENST00000452388 923 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 RBMY2UP-201ENST00000453474 324 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 OR6K1P-201ENST00000456766 971 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AC020893.1-201ENST00000502452 580 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AC026427.2-201ENST00000506228 536 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 HSPE1P23-201ENST00000509838 286 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 AC112673.1-201ENST00000513168 575 ntBASIC3.56□□□□□ -1.84
PRPF39Q86UA1 RNU2-27P-201ENST00000516185 142 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms