Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.28□□□□□ -1.56
MSX1P28360 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX1P28360 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX1P28360 RPL7L1P1-201ENST00000448259 785 ntBASIC5.28□□□□□ -1.56
MSX1P28360 TPT1P13-201ENST00000449760 499 ntBASIC5.28□□□□□ -1.56
MSX1P28360 FRG2FP-204ENST00000453982 852 ntBASIC5.28□□□□□ -1.56
MSX1P28360 RN7SL466P-201ENST00000497546 295 ntBASIC5.28□□□□□ -1.56
MSX1P28360 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 MRPS33P2-201ENST00000507850 322 ntBASIC5.28□□□□□ -1.56
MSX1P28360 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX1P28360 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX1P28360 RNU6-1278P-201ENST00000516130 107 ntBASIC5.28□□□□□ -1.56
MSX1P28360 SCARNA24.2-201ENST00000516968 130 ntBASIC5.28□□□□□ -1.56
MSX1P28360 IGKV2-18-201ENST00000522607 343 ntBASIC5.28□□□□□ -1.56
MSX1P28360 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX1P28360 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX1P28360 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX1P28360 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.28□□□□□ -1.56
MSX1P28360 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 SUMO2P15-201ENST00000604285 278 ntBASIC5.28□□□□□ -1.56
MSX1P28360 AL450472.3-201ENST00000615578 367 ntBASIC5.28□□□□□ -1.56
MSX1P28360 MIR6719-201ENST00000622428 87 ntBASIC5.28□□□□□ -1.56
MSX1P28360 AL138820.1-201ENST00000617901 5305 ntBASIC5.28□□□□□ -1.56
MSX1P28360 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 AP004607.3-201ENST00000530354 3915 ntBASIC5.28□□□□□ -1.56
MSX1P28360 AP000756.2-201ENST00000624168 2567 ntBASIC5.28□□□□□ -1.56
MSX1P28360 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
MSX1P28360 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
MSX1P28360 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
MSX1P28360 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 MTND5P9-201ENST00000503854 1755 ntBASIC5.27□□□□□ -1.57
MSX1P28360 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.27□□□□□ -1.57
MSX1P28360 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.27□□□□□ -1.57
MSX1P28360 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 BCORP1-203ENST00000513194 5093 ntBASIC5.27□□□□□ -1.57
MSX1P28360 RPL9P7-201ENST00000330965 580 ntBASIC5.27□□□□□ -1.57
MSX1P28360 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 RNY1P5-201ENST00000383890 115 ntBASIC5.27□□□□□ -1.57
MSX1P28360 Y_RNA.541-201ENST00000384640 113 ntBASIC5.27□□□□□ -1.57
MSX1P28360 Y_RNA.581-201ENST00000391017 97 ntBASIC5.27□□□□□ -1.57
MSX1P28360 RNU6-603P-201ENST00000411403 107 ntBASIC5.27□□□□□ -1.57
MSX1P28360 OR2AT2P-201ENST00000413438 905 ntBASIC5.27□□□□□ -1.57
MSX1P28360 MRPL53P1-201ENST00000414323 319 ntBASIC5.27□□□□□ -1.57
MSX1P28360 AC063979.1-201ENST00000415539 377 ntBASIC5.27□□□□□ -1.57
MSX1P28360 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX1P28360 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.27□□□□□ -1.57
MSX1P28360 HMGB1P27-201ENST00000431429 603 ntBASIC5.27□□□□□ -1.57
MSX1P28360 AC090774.1-201ENST00000435925 246 ntBASIC5.27□□□□□ -1.57
MSX1P28360 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
MSX1P28360 AL513043.1-201ENST00000439124 535 ntBASIC5.27□□□□□ -1.57
MSX1P28360 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.27□□□□□ -1.57
MSX1P28360 RPS23P2-201ENST00000463671 415 ntBASIC5.27□□□□□ -1.57
MSX1P28360 RPL9P9-202ENST00000466501 579 ntBASIC5.27□□□□□ -1.57
MSX1P28360 RPL23AP2-201ENST00000471227 466 ntBASIC5.27□□□□□ -1.57
MSX1P28360 RPS24P16-201ENST00000497294 392 ntBASIC5.27□□□□□ -1.57
MSX1P28360 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX1P28360 HIGD1AP3-201ENST00000515857 278 ntBASIC5.27□□□□□ -1.57
MSX1P28360 RN7SKP277-201ENST00000516895 283 ntBASIC5.27□□□□□ -1.57
MSX1P28360 FTH1P11-201ENST00000517577 551 ntBASIC5.27□□□□□ -1.57
MSX1P28360 IGHVII-53-1-201ENST00000519538 255 ntBASIC5.27□□□□□ -1.57
MSX1P28360 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
MSX1P28360 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX1P28360 SYF2P1-201ENST00000550658 413 ntBASIC5.27□□□□□ -1.57
MSX1P28360 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX1P28360 AL442163.3-201ENST00000554110 156 ntBASIC5.27□□□□□ -1.57
MSX1P28360 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.27□□□□□ -1.57
MSX1P28360 AC027228.2-201ENST00000567141 2154 ntBASIC5.27□□□□□ -1.57
MSX1P28360 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX1P28360 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.27□□□□□ -1.57
MSX1P28360 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.27□□□□□ -1.57
MSX1P28360 U2.14-201ENST00000615943 113 ntBASIC5.27□□□□□ -1.57
MSX1P28360 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 AC138907.8-201ENST00000623981 2256 ntBASIC5.27□□□□□ -1.57
MSX1P28360 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 AL353796.1-201ENST00000561542 3241 ntBASIC5.27□□□□□ -1.57
MSX1P28360 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSX1P28360 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
MSX1P28360 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
MSX1P28360 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX1P28360 RNA5SP46-201ENST00000362370 120 ntBASIC5.26□□□□□ -1.57
MSX1P28360 Y_RNA.170-201ENST00000363746 110 ntBASIC5.26□□□□□ -1.57
MSX1P28360 RNU6-704P-201ENST00000364162 103 ntBASIC5.26□□□□□ -1.57
MSX1P28360 MIR105-2-201ENST00000385083 81 ntBASIC5.26□□□□□ -1.57
MSX1P28360 MIR937-201ENST00000401271 86 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX1P28360 AC099336.2-201ENST00000422457 254 ntBASIC5.26□□□□□ -1.57
MSX1P28360 PPP1R11P2-201ENST00000423543 382 ntBASIC5.26□□□□□ -1.57
MSX1P28360 VTI1BP4-201ENST00000427516 527 ntBASIC5.26□□□□□ -1.57
MSX1P28360 ISCUP1-201ENST00000454451 448 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AC004129.2-201ENST00000457229 287 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms