Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AP000926.1-201ENST00000479573 241 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 RPL21P103-201ENST00000479921 488 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 HIGD1AP3-201ENST00000515857 278 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.689-201ENST00000516589 107 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 RNU6-897P-201ENST00000517135 105 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AC009643.1-201ENST00000532030 391 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AL138895.2-201ENST00000603019 178 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AC073410.2-201ENST00000603240 332 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AC104763.2-201ENST00000604179 382 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 MIR1910-201ENST00000636955 80 ntBASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
HIF3AQ9Y2N7 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 RN7SKP162-201ENST00000363605 345 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 RN7SKP69-201ENST00000365390 305 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 RNU6-746P-201ENST00000384112 109 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 SNORA5.1-201ENST00000384275 131 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.577-201ENST00000384794 101 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AL138885.1-201ENST00000405921 675 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 RNA5SP56-201ENST00000410277 118 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC079809.1-201ENST00000415468 276 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 RPL21P38-201ENST00000418090 167 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 VTI1BP4-201ENST00000427516 527 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 OR6D1P-201ENST00000436165 939 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 CYCSP43-201ENST00000438233 310 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AL450023.1-201ENST00000450868 751 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 IGHV5-78-201ENST00000450948 295 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC110792.1-201ENST00000491826 472 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 SNORA43.3-201ENST00000517240 103 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 CDH12P4-201ENST00000517835 295 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 CDH12P3-201ENST00000517935 295 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 CDH12P1-201ENST00000518435 295 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC007991.1-201ENST00000522680 631 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AP006587.4-201ENST00000526053 529 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 MIR3133-201ENST00000583157 78 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC009779.6-201ENST00000603972 165 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AL161616.1-201ENST00000611867 286 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC064801.1-201ENST00000612025 407 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AP005431.1-201ENST00000618479 319 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC073869.8-201ENST00000641806 335 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AL360270.2-201ENST00000562952 5985 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 MAPK10-338ENST00000641647 3362 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC093591.2-201ENST00000565254 3843 ntBASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.94□□□□□ -1.62
HIF3AQ9Y2N7 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.105-201ENST00000363182 111 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.274-201ENST00000364714 101 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.416-201ENST00000384014 113 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 RNU6-398P-201ENST00000384143 109 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 Y_RNA.539-201ENST00000384635 107 ntBASIC4.93□□□□□ -1.62
HIF3AQ9Y2N7 RNU2-14P-201ENST00000411053 191 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms