Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 Y_RNA.311-201ENST00000365068 96 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 Y_RNA.465-201ENST00000384293 102 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 ANAPC10P1-201ENST00000395991 556 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AL356131.1-201ENST00000405826 414 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 RNA5SP344-201ENST00000411081 104 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 RPL7P30-201ENST00000420888 709 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC084290.1-201ENST00000434995 374 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.18□□□□□ -1.9
PTPN4P29074 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PTPN4P29074 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AL590664.1-201ENST00000448065 339 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.18□□□□□ -1.9
PTPN4P29074 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 MTND1P16-201ENST00000465177 898 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC104472.2-201ENST00000469035 601 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 RPL7P38-201ENST00000488396 739 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.18□□□□□ -1.9
PTPN4P29074 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC079395.1-201ENST00000510981 262 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 APOOP4-201ENST00000513530 597 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 RN7SKP43-201ENST00000516173 320 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PTPN4P29074 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC022662.1-201ENST00000580252 331 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.18□□□□□ -1.9
PTPN4P29074 MAGOH2P-202ENST00000584384 429 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.18□□□□□ -1.9
PTPN4P29074 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC026790.2-201ENST00000606282 430 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.18□□□□□ -1.9
PTPN4P29074 AC107075.1-201ENST00000613695 314 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AC006386.1-201ENST00000619436 415 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 AL356321.1-201ENST00000621360 228 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.18□□□□□ -1.9
PTPN4P29074 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
PTPN4P29074 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTPN4P29074 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PTPN4P29074 AP002907.1-201ENST00000606361 1430 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTPN4P29074 AL513185.3-201ENST00000433335 1300 ntBASIC3.18□□□□□ -1.9
PTPN4P29074 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PTPN4P29074 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PTPN4P29074 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
PTPN4P29074 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PTPN4P29074 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PTPN4P29074 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PTPN4P29074 RNU6-1155P-201ENST00000363554 107 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 HMGN1P24-201ENST00000412282 298 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.17□□□□□ -1.9
PTPN4P29074 SSXP9-201ENST00000417503 292 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 MTCO2P17-201ENST00000424336 677 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.17□□□□□ -1.9
PTPN4P29074 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.17□□□□□ -1.9
PTPN4P29074 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.17□□□□□ -1.9
PTPN4P29074 TRGVB-201ENST00000453257 471 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 RN7SL504P-201ENST00000494496 287 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.17□□□□□ -1.9
PTPN4P29074 RNU6-311P-201ENST00000516224 102 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PTPN4P29074 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.17□□□□□ -1.9
PTPN4P29074 CR383656.7-201ENST00000548164 174 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 MED28P6-201ENST00000558776 231 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.17□□□□□ -1.9
PTPN4P29074 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.17□□□□□ -1.9
PTPN4P29074 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.17□□□□□ -1.9
PTPN4P29074 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.17□□□□□ -1.9
PTPN4P29074 AC012443.1-201ENST00000605605 231 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 AC034229.4-201ENST00000607861 441 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 TUG1_1.1-201ENST00000610654 145 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 AL138880.2-201ENST00000616214 239 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 AL357080.1-201ENST00000617394 239 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
PTPN4P29074 AL596245.1-201ENST00000618994 362 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PTPN4P29074 AC127502.3-201ENST00000636170 1206 ntBASIC3.17□□□□□ -1.9
PTPN4P29074 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.17□□□□□ -1.9
PTPN4P29074 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.17□□□□□ -1.9
PTPN4P29074 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
PTPN4P29074 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.16□□□□□ -1.9
PTPN4P29074 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PTPN4P29074 GNG5P1-201ENST00000255500 204 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 RNA5SP197-201ENST00000363357 119 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 SNORA48.5-201ENST00000391143 135 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 AL136372.1-201ENST00000403060 228 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 RNA5SP38-201ENST00000410750 119 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 AC068533.2-201ENST00000411872 306 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 CCDC58P2-201ENST00000417131 366 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.16□□□□□ -1.9
PTPN4P29074 BEND7P1-201ENST00000422058 457 ntBASIC3.16□□□□□ -1.9
PTPN4P29074 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.16□□□□□ -1.9
PTPN4P29074 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms