Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 RNU6-212P-201ENST00000362642 104 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 SNORD27-201ENST00000363981 72 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 Y_RNA.416-201ENST00000384014 113 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AL451074.5-201ENST00000415894 435 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 RAC1P3-201ENST00000416129 580 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AL158071.1-201ENST00000430315 461 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 FHP1-201ENST00000442741 703 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 FCF1P4-201ENST00000448326 183 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 OR2AQ1P-201ENST00000451972 200 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AP000797.2-201ENST00000475768 606 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 RNU6-397P-201ENST00000516226 104 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 IGLVIV-53-201ENST00000520107 367 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 HMGB1P40-201ENST00000525121 540 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AP003733.2-201ENST00000529409 171 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 RPS29P30-201ENST00000600975 111 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AC009779.6-201ENST00000603972 165 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AC004792.1-201ENST00000614523 137 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 AC007998.5-201ENST00000622938 237 ntBASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SH3RF1Q7Z6J0 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 Y_RNA.151-201ENST00000363566 112 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RNU6-280P-201ENST00000364145 104 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RNU6-125P-201ENST00000384505 107 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 MIR625-201ENST00000385047 85 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 SNORA48.4-201ENST00000391089 134 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC110754.1-201ENST00000399740 601 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RNU4-65P-201ENST00000410473 140 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 BX276092.3-201ENST00000424182 230 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 snoU13.20-201ENST00000459180 104 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC087385.1-201ENST00000475062 312 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RN7SL459P-201ENST00000481078 302 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC018437.1-201ENST00000492214 406 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RNU6-1212P-201ENST00000517023 104 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC144568.1-201ENST00000520139 137 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC090517.1-201ENST00000569307 266 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RN7SL52P-201ENST00000584271 284 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC008745.1-201ENST00000604064 271 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RN7SL722P-201ENST00000617780 284 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RN7SL565P-201ENST00000618246 284 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 ANKRD36BP1-201ENST00000358576 1779 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AC009951.1-201ENST00000623674 2614 ntBASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.07□□□□□ -1.44
SH3RF1Q7Z6J0 AP005432.1-201ENST00000580891 3485 ntBASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SH3RF1Q7Z6J0 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms