Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.22□□□□□ -2.21
COL7A1Q02388 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.22□□□□□ -2.21
COL7A1Q02388 AP001148.1-201ENST00000624124 2359 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC1.22□□□□□ -2.21
COL7A1Q02388 MTCYBP7-201ENST00000419540 1134 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 HMGN2P19-201ENST00000425149 265 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.22□□□□□ -2.21
COL7A1Q02388 GTF2IP9-201ENST00000502460 301 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 RN7SKP49-201ENST00000516675 260 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.22□□□□□ -2.21
COL7A1Q02388 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.22□□□□□ -2.21
COL7A1Q02388 AC136443.5-201ENST00000603741 370 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AC008568.2-201ENST00000623862 2313 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AL021368.2-201ENST00000606125 5352 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
COL7A1Q02388 BTBD10P2-201ENST00000404779 676 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 MIR1323-201ENST00000408090 73 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AC007390.1-201ENST00000415722 356 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.22□□□□□ -2.21
COL7A1Q02388 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.22□□□□□ -2.21
COL7A1Q02388 RPL23AP20-201ENST00000447965 421 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.22□□□□□ -2.21
COL7A1Q02388 Y_RNA.681-201ENST00000516445 113 ntBASIC1.22□□□□□ -2.21
COL7A1Q02388 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.22□□□□□ -2.21
COL7A1Q02388 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.22□□□□□ -2.21
COL7A1Q02388 AC110774.1-201ENST00000623567 2018 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.21□□□□□ -2.22
COL7A1Q02388 CALM1P2-201ENST00000452941 448 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 RPS15AP36-201ENST00000492022 382 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
COL7A1Q02388 RNA5SP402-201ENST00000517148 110 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 FAM92A1P1-201ENST00000528023 890 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AC103987.3-201ENST00000582071 292 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.21□□□□□ -2.22
COL7A1Q02388 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.21□□□□□ -2.22
COL7A1Q02388 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.21□□□□□ -2.22
COL7A1Q02388 WWP1P1-201ENST00000466609 2769 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL7A1Q02388 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL7A1Q02388 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL7A1Q02388 Y_RNA.393-201ENST00000383936 102 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 RNU2-22P-201ENST00000411266 212 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 RNU6-516P-201ENST00000411381 104 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AL136133.1-201ENST00000413694 376 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.21□□□□□ -2.22
COL7A1Q02388 USP9YP15-201ENST00000442391 422 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.21□□□□□ -2.22
COL7A1Q02388 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.21□□□□□ -2.22
COL7A1Q02388 AC090819.1-201ENST00000523800 1111 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.21□□□□□ -2.22
COL7A1Q02388 AC011712.1-201ENST00000588959 234 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AC013444.2-201ENST00000603317 787 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AL391646.1-201ENST00000603860 190 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 AL353770.2-201ENST00000620024 78 ntBASIC1.21□□□□□ -2.22
COL7A1Q02388 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
COL7A1Q02388 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC1.21□□□□□ -2.22
COL7A1Q02388 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.2□□□□□ -2.22
COL7A1Q02388 UBE2L2-201ENST00000254302 429 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 RPL21P2-201ENST00000440049 481 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.2□□□□□ -2.22
COL7A1Q02388 RNU2-58P-201ENST00000516403 183 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC1.2□□□□□ -2.22
COL7A1Q02388 AL137100.2-201ENST00000555786 315 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
COL7A1Q02388 RBBP8P1-201ENST00000449447 1844 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 DNAJC19P6-201ENST00000401853 280 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 DYNLL1P5-201ENST00000467158 270 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC1.2□□□□□ -2.22
COL7A1Q02388 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.2□□□□□ -2.22
COL7A1Q02388 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.2□□□□□ -2.22
COL7A1Q02388 RMST_6.1-201ENST00000611980 203 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC1.2□□□□□ -2.22
COL7A1Q02388 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC1.2□□□□□ -2.22
COL7A1Q02388 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.2□□□□□ -2.22
COL7A1Q02388 OR4G11P-202ENST00000642116 1414 ntBASIC1.2□□□□□ -2.22
COL7A1Q02388 RNU4-13P-201ENST00000364019 141 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AL365400.1-201ENST00000431854 640 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 HMGB1P45-201ENST00000435986 653 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 CFTRP1-201ENST00000456646 183 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.19□□□□□ -2.22
COL7A1Q02388 AC098799.2-201ENST00000509466 868 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC104986.1-201ENST00000517978 436 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 VTA1P2-201ENST00000520205 911 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC1.19□□□□□ -2.22
COL7A1Q02388 AC109446.2-201ENST00000567872 497 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 RPS3AP23-202ENST00000574601 686 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 MIR1273G-201ENST00000577677 100 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 MIR151B-201ENST00000584249 96 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.19□□□□□ -2.22
COL7A1Q02388 AC245036.5-201ENST00000596330 847 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 KATNBL1P1-201ENST00000605192 748 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.19□□□□□ -2.22
COL7A1Q02388 RPL39P40-201ENST00000445481 146 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC1.19□□□□□ -2.22
COL7A1Q02388 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.19□□□□□ -2.22
COL7A1Q02388 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC1.19□□□□□ -2.22
COL7A1Q02388 MIR98-201ENST00000606724 119 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms