Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
BRCA1P38398 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.79□□□□□ -1.96
BRCA1P38398 RNA5SP445-201ENST00000515889 115 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 RNU6-295P-201ENST00000516901 104 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AF279873.1-201ENST00000523393 313 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 MIR4504-201ENST00000577413 92 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC023043.2-201ENST00000589678 1026 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.79□□□□□ -1.96
BRCA1P38398 XIST_intron.1-201ENST00000619444 68 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 AL356266.1-201ENST00000623311 483 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 U6.98-201ENST00000637157 84 ntBASIC2.79□□□□□ -1.96
BRCA1P38398 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
BRCA1P38398 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
BRCA1P38398 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
BRCA1P38398 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.78□□□□□ -1.96
BRCA1P38398 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.78□□□□□ -1.96
BRCA1P38398 BTBD7P2-201ENST00000441962 620 ntBASIC2.78□□□□□ -1.96
BRCA1P38398 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
BRCA1P38398 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
BRCA1P38398 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.78□□□□□ -1.96
BRCA1P38398 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
BRCA1P38398 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
BRCA1P38398 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.78□□□□□ -1.96
BRCA1P38398 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.78□□□□□ -1.96
BRCA1P38398 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
BRCA1P38398 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
BRCA1P38398 MTND5P29-201ENST00000458676 1807 ntBASIC2.78□□□□□ -1.96
BRCA1P38398 RPL9P7-201ENST00000330965 580 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 Y_RNA.40-201ENST00000362645 93 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 SNORA25.6-201ENST00000364121 118 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 RNU6-173P-201ENST00000364215 104 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.77□□□□□ -1.97
BRCA1P38398 SNORA51.6-201ENST00000384151 125 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
BRCA1P38398 RNU6-796P-201ENST00000391086 107 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 DSTNP4-201ENST00000399472 474 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
BRCA1P38398 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
BRCA1P38398 SDCBPP3-201ENST00000419629 891 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
BRCA1P38398 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.77□□□□□ -1.97
BRCA1P38398 SNRPGP3-201ENST00000469405 227 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
BRCA1P38398 RPL23AP44-201ENST00000482216 473 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.77□□□□□ -1.97
BRCA1P38398 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.77□□□□□ -1.97
BRCA1P38398 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.77□□□□□ -1.97
BRCA1P38398 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.77□□□□□ -1.97
BRCA1P38398 AC010735.1-201ENST00000567305 1026 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AC012254.4-201ENST00000588843 273 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AC026741.1-201ENST00000605892 482 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AL118556.2-201ENST00000614375 824 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AC092326.2-201ENST00000624772 1561 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
BRCA1P38398 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
BRCA1P38398 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
BRCA1P38398 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.77□□□□□ -1.97
BRCA1P38398 RNU6-730P-201ENST00000383954 104 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 RNU6-837P-201ENST00000391056 108 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.77□□□□□ -1.97
BRCA1P38398 AC246680.2-201ENST00000422106 389 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 RPP40P1-201ENST00000426762 456 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 ARF4P2-201ENST00000430209 526 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC2.77□□□□□ -1.97
BRCA1P38398 BX248409.1-201ENST00000455497 255 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AC048346.1-201ENST00000510247 144 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 OR8K2P-201ENST00000524645 927 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 OR4G1P-201ENST00000588632 938 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.77□□□□□ -1.97
BRCA1P38398 AC016542.1-201ENST00000608259 493 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AC006963.1-201ENST00000624003 1052 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 AL512506.2-201ENST00000624472 458 ntBASIC2.77□□□□□ -1.97
BRCA1P38398 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
BRCA1P38398 AL590004.2-201ENST00000404787 371 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.76□□□□□ -1.97
BRCA1P38398 ELOCP13-201ENST00000443934 329 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 MTND2P30-201ENST00000456663 382 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.76□□□□□ -1.97
BRCA1P38398 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.76□□□□□ -1.97
BRCA1P38398 AC087879.1-201ENST00000474343 374 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 AC117522.2-201ENST00000510049 657 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 SNORA31.8-201ENST00000516327 108 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.76□□□□□ -1.97
BRCA1P38398 AC010198.2-201ENST00000550612 259 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC2.76□□□□□ -1.97
BRCA1P38398 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.76□□□□□ -1.97
BRCA1P38398 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC2.76□□□□□ -1.97
BRCA1P38398 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.76□□□□□ -1.97
BRCA1P38398 AC003001.2-201ENST00000616294 831 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.76□□□□□ -1.97
BRCA1P38398 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.76□□□□□ -1.97
BRCA1P38398 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
BRCA1P38398 AC005539.1-201ENST00000443768 1479 ntBASIC2.76□□□□□ -1.97
BRCA1P38398 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
BRCA1P38398 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.76□□□□□ -1.97
BRCA1P38398 AC000367.1-201ENST00000452711 1766 ntBASIC2.75□□□□□ -1.97
BRCA1P38398 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.75□□□□□ -1.97
BRCA1P38398 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms