Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL033528.1-201ENST00000453780 140 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RPL7P47-201ENST00000497299 556 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 AC091133.4-201ENST00000511142 308 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 APOOP4-201ENST00000513530 597 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RN7SKP57-201ENST00000517248 293 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.37□□□□□ -1.71
COL3A1P02461 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.37□□□□□ -1.71
COL3A1P02461 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 MIR3671-201ENST00000580455 88 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 MIR4433B-201ENST00000581329 102 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 MIR548AB-201ENST00000584917 84 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 AL592295.2-201ENST00000612578 206 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AP004607.9-201ENST00000618202 316 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
COL3A1P02461 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL3A1P02461 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.36□□□□□ -1.71
COL3A1P02461 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.36□□□□□ -1.71
COL3A1P02461 Y_RNA.548-201ENST00000384656 105 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 RPL31P1-201ENST00000398116 372 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AL356968.1-201ENST00000416622 474 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.36□□□□□ -1.71
COL3A1P02461 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 PTP4A1P1-201ENST00000420539 515 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC4.36□□□□□ -1.71
COL3A1P02461 AC008850.1-201ENST00000427546 362 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 SEPT7P5-201ENST00000434048 306 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 RPS25P9-201ENST00000435591 252 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AC244505.5-201ENST00000443639 207 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 SNRPFP4-201ENST00000456366 242 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL3A1P02461 GAPDHP39-201ENST00000481866 979 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 LARP1BP2-201ENST00000486594 519 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 HMGN1P12-201ENST00000499125 195 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL3A1P02461 AC018442.3-201ENST00000523025 183 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.36□□□□□ -1.71
COL3A1P02461 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.36□□□□□ -1.71
COL3A1P02461 AC011611.1-201ENST00000552179 197 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AL390334.1-201ENST00000556395 450 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.36□□□□□ -1.71
COL3A1P02461 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC4.36□□□□□ -1.71
COL3A1P02461 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.36□□□□□ -1.71
COL3A1P02461 AC098614.4-201ENST00000607601 462 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 AC131902.3-201ENST00000611767 581 ntBASIC4.36□□□□□ -1.71
COL3A1P02461 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.36□□□□□ -1.71
COL3A1P02461 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.36□□□□□ -1.71
COL3A1P02461 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL3A1P02461 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
COL3A1P02461 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
COL3A1P02461 NSRP1P1-201ENST00000444067 1693 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 AC000123.3-201ENST00000624029 4975 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 ENSAP3-201ENST00000312710 333 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 SNORD65.1-201ENST00000390889 71 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 SNORA40.3-201ENST00000390964 122 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 FAT1P1-201ENST00000406588 507 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 MIR1302-11-201ENST00000408051 138 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 MIR1302-9-201ENST00000408365 138 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 MIR1302-10-201ENST00000408734 138 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.35□□□□□ -1.71
COL3A1P02461 RNU6-55P-201ENST00000411092 107 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 RNU6-575P-201ENST00000411326 105 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 RNU6-954P-201ENST00000411355 107 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
COL3A1P02461 RPS26P40-201ENST00000435209 294 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.35□□□□□ -1.71
COL3A1P02461 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.35□□□□□ -1.71
COL3A1P02461 BX322784.1-201ENST00000455793 1077 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 RPL30P9-201ENST00000465586 330 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 AL136126.1-201ENST00000473603 402 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 RBM43P1-201ENST00000476891 1081 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 DYNLL1P6-201ENST00000503440 264 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL3A1P02461 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.35□□□□□ -1.71
COL3A1P02461 RNU6-1225P-201ENST00000516336 65 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.35□□□□□ -1.71
COL3A1P02461 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.35□□□□□ -1.71
COL3A1P02461 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.35□□□□□ -1.71
COL3A1P02461 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL3A1P02461 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.35□□□□□ -1.71
COL3A1P02461 HIGD1AP1-201ENST00000550979 275 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 GTF2IP8-201ENST00000560687 584 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.35□□□□□ -1.71
COL3A1P02461 AC005261.5-201ENST00000596280 355 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 AL009028.1-201ENST00000604895 802 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 MIR1302-2-201ENST00000607096 138 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.35□□□□□ -1.71
COL3A1P02461 AC024560.3-201ENST00000608482 349 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 AP003122.6-201ENST00000623831 495 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms