Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MTCO3P40-201ENST00000392516 676 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 CIR1P3-201ENST00000405137 479 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 BTF3P7-201ENST00000407097 488 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 RNU4-6P-201ENST00000410804 122 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 Y_RNA.625-201ENST00000411256 107 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 RNU6-195P-201ENST00000411352 109 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 HMGN1P24-201ENST00000412282 298 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MTND1P23-201ENST00000416931 372 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL356095.1-201ENST00000417217 199 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL691449.1-201ENST00000426570 421 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC133104.1-201ENST00000429100 218 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL358934.1-201ENST00000432346 324 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 FCF1P1-201ENST00000432690 571 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MTND4LP10-201ENST00000435146 291 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MTATP6P30-201ENST00000443540 664 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC079448.1-201ENST00000449377 373 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC003071.1-201ENST00000451219 789 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MTCO2P29-201ENST00000465212 189 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC084198.1-201ENST00000477747 402 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 PTGES3P3-201ENST00000511479 482 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 SAP18P1-201ENST00000512058 390 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC135001.1-201ENST00000544546 283 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL845331.3-202ENST00000562856 261 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 UBE2L4-201ENST00000587688 464 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC011816.2-201ENST00000607089 556 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MIR6867-201ENST00000610636 67 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC012150.2-201ENST00000621300 544 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL161637.1-201ENST00000622380 412 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL158801.5-201ENST00000623123 465 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AC091953.2-201ENST00000623979 160 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 RLIMP1-201ENST00000339626 1680 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 Y_RNA.9-201ENST00000362354 101 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 RNU6-989P-201ENST00000362756 107 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 CCNG1P1-201ENST00000406783 885 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC137499.1-201ENST00000427602 88 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 CKS1BP5-201ENST00000434172 273 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC119618.1-201ENST00000434191 222 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 C1DP4-201ENST00000455429 424 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 HMGB1P25-201ENST00000468402 607 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC010618.1-201ENST00000469924 477 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC023598.1-201ENST00000472521 361 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC010587.1-201ENST00000505809 469 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 SNORA31.9-201ENST00000516429 84 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC090281.1-201ENST00000523019 276 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AP001893.2-201ENST00000526949 202 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 MIR3146-201ENST00000580367 79 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 RNU4-89P-201ENST00000607443 133 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 OR6R2P-201ENST00000609216 300 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 MLECP1-201ENST00000615893 709 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC091905.1-201ENST00000624400 311 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 ELF2P3-201ENST00000445099 1506 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 PNPT1P2-201ENST00000456768 2050 ntBASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 129.5 ms