Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC113412.1-201ENST00000425840 504 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AC092423.1-201ENST00000430165 186 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AC093414.1-201ENST00000434712 514 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AL772161.1-201ENST00000439130 476 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AC023141.8-201ENST00000442554 208 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 U8.21-201ENST00000459536 136 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 RN7SL583P-201ENST00000475692 287 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 MED28P2-201ENST00000475771 317 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 RPL32P33-201ENST00000487023 394 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 RNU6-111P-201ENST00000517179 105 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AC008489.1-201ENST00000524271 483 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RNU6-395P-201ENST00000365662 106 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC119751.6-201ENST00000416712 186 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AL096701.2-201ENST00000416920 238 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AF186996.5-201ENST00000418098 904 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AL133173.1-201ENST00000423458 397 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC004383.1-201ENST00000438135 289 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC073587.1-201ENST00000447093 876 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 SDC4P-201ENST00000453285 601 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RPS27AP3-201ENST00000453803 454 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RPSAP50-201ENST00000481955 852 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC007016.1-201ENST00000512110 244 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 SNORA31.6-201ENST00000516241 130 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RNU6-1315P-201ENST00000517187 99 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 MIR1273C-201ENST00000578669 77 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 MIR5701-3-201ENST00000578890 82 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 RN7SL708P-201ENST00000580952 299 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 MIR5701-1-201ENST00000585138 82 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC012433.1-201ENST00000588916 398 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 MIR5701-2-201ENST00000615634 82 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 AC243829.7-201ENST00000633081 225 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 SDAD1P2-201ENST00000441308 2028 ntBASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIMD1Q9UGP4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC6□□□□□ -1.45
LIMD1Q9UGP4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
LIMD1Q9UGP4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
LIMD1Q9UGP4 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
LIMD1Q9UGP4 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
LIMD1Q9UGP4 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6□□□□□ -1.45
LIMD1Q9UGP4 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6□□□□□ -1.45
LIMD1Q9UGP4 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6□□□□□ -1.45
LIMD1Q9UGP4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
LIMD1Q9UGP4 Y_RNA.533-201ENST00000384596 114 ntBASIC6□□□□□ -1.45
LIMD1Q9UGP4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC6□□□□□ -1.45
LIMD1Q9UGP4 RPL23AP17-201ENST00000401064 499 ntBASIC6□□□□□ -1.45
LIMD1Q9UGP4 AL513331.1-201ENST00000411908 397 ntBASIC6□□□□□ -1.45
LIMD1Q9UGP4 RAC1P3-201ENST00000416129 580 ntBASIC6□□□□□ -1.45
LIMD1Q9UGP4 AC096920.1-201ENST00000423991 241 ntBASIC6□□□□□ -1.45
LIMD1Q9UGP4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms