Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.09□□□□□ -1.75
VSX1Q9NZR4 AC015813.4-201ENST00000610469 179 ntBASIC4.09□□□□□ -1.75
VSX1Q9NZR4 AL121757.2-201ENST00000611223 313 ntBASIC4.09□□□□□ -1.75
VSX1Q9NZR4 AP001486.3-201ENST00000615334 372 ntBASIC4.09□□□□□ -1.75
VSX1Q9NZR4 AC233309.1-201ENST00000619522 751 ntBASIC4.09□□□□□ -1.75
VSX1Q9NZR4 AC010338.1-201ENST00000621823 717 ntBASIC4.09□□□□□ -1.75
VSX1Q9NZR4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.09□□□□□ -1.75
VSX1Q9NZR4 DHX40P1-201ENST00000588725 1412 ntBASIC4.09□□□□□ -1.75
VSX1Q9NZR4 RIOK3P1-201ENST00000418778 1528 ntBASIC4.09□□□□□ -1.75
VSX1Q9NZR4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VSX1Q9NZR4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
VSX1Q9NZR4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.76
VSX1Q9NZR4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
VSX1Q9NZR4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
VSX1Q9NZR4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
VSX1Q9NZR4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.09□□□□□ -1.76
VSX1Q9NZR4 AC090337.1-201ENST00000579651 2074 ntBASIC4.09□□□□□ -1.76
VSX1Q9NZR4 AC004972.1-201ENST00000623934 2209 ntBASIC4.09□□□□□ -1.76
VSX1Q9NZR4 AL137003.2-201ENST00000606924 2538 ntBASIC4.09□□□□□ -1.76
VSX1Q9NZR4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU6-1284P-201ENST00000363701 100 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU6-960P-201ENST00000364056 120 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU6-356P-201ENST00000384140 107 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 Y_RNA.548-201ENST00000384656 105 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MIR105-2-201ENST00000385083 81 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU11-4P-201ENST00000391149 133 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU4-65P-201ENST00000410473 140 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU6-193P-201ENST00000410977 107 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 EEF1A1P40-201ENST00000412883 573 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AL137014.1-201ENST00000420490 1226 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MTCO3P46-201ENST00000425787 232 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AL365400.1-201ENST00000431854 640 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RPL23AP33-201ENST00000442301 452 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 DDX10P1-201ENST00000448545 1933 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AL513533.1-201ENST00000453728 415 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RPL37P6-202ENST00000464216 403 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RN7SL41P-201ENST00000476144 297 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC093278.1-201ENST00000494700 600 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC020893.1-201ENST00000502452 580 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC111000.3-201ENST00000508057 576 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC007016.1-201ENST00000512110 244 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AL133271.1-201ENST00000538229 291 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MIR4458-201ENST00000578872 75 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MIR4436B2-201ENST00000581415 91 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MIR4436B1-201ENST00000583272 91 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MIR4737-201ENST00000583979 81 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC090229.1-201ENST00000590983 1609 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AL031320.1-201ENST00000604177 357 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 RNU4-89P-201ENST00000607443 133 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC091979.2-201ENST00000607514 214 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC211433.2-201ENST00000608433 387 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC019193.2-201ENST00000610012 634 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MIR6853-201ENST00000619642 74 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC092326.2-201ENST00000624772 1561 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 U3.53-201ENST00000628922 216 ntBASIC4.08□□□□□ -1.76
VSX1Q9NZR4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VSX1Q9NZR4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 ZNF137P-201ENST00000456718 1920 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 OR4G1P-203ENST00000641984 1631 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 Y_RNA.22-201ENST00000362492 102 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 Y_RNA.100-201ENST00000363141 102 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 SNORA58B-201ENST00000364259 136 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 XGY1-201ENST00000381172 446 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 Y_RNA.493-201ENST00000384422 102 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 SDHCP2-201ENST00000398565 501 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AL645733.1-201ENST00000402250 217 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AL136372.1-201ENST00000403060 228 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 RNU6-387P-201ENST00000411331 105 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC016831.2-201ENST00000417179 352 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 RPL35AP12-201ENST00000425362 338 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms