Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC008687.2-201ENST00000597865 520 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AC091488.1-201ENST00000604239 660 ntBASIC3.24□□□□□ -1.89
MSH6P52701 BNIP3P4-201ENST00000604946 565 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AC103710.2-201ENST00000609912 942 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AL109659.3-201ENST00000624985 950 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AL356118.1-201ENST00000635272 1078 ntBASIC3.24□□□□□ -1.89
MSH6P52701 AC025263.3-201ENST00000622965 1396 ntBASIC3.23□□□□□ -1.89
MSH6P52701 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
MSH6P52701 AC011978.2-201ENST00000569835 2054 ntBASIC3.23□□□□□ -1.89
MSH6P52701 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
MSH6P52701 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
MSH6P52701 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.23□□□□□ -1.89
MSH6P52701 RNU6-272P-201ENST00000411028 104 ntBASIC3.23□□□□□ -1.89
MSH6P52701 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.23□□□□□ -1.89
MSH6P52701 AL513175.2-201ENST00000422071 443 ntBASIC3.23□□□□□ -1.89
MSH6P52701 TRIAP1P1-201ENST00000427062 225 ntBASIC3.23□□□□□ -1.89
MSH6P52701 YWHAZP7-201ENST00000436906 631 ntBASIC3.23□□□□□ -1.89
MSH6P52701 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
MSH6P52701 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH6P52701 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH6P52701 AC091179.1-201ENST00000461606 579 ntBASIC3.23□□□□□ -1.89
MSH6P52701 RPS27P23-201ENST00000487608 251 ntBASIC3.23□□□□□ -1.89
MSH6P52701 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
MSH6P52701 CENPUP2-201ENST00000555897 1186 ntBASIC3.23□□□□□ -1.89
MSH6P52701 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH6P52701 MTCO3P13-201ENST00000577757 781 ntBASIC3.23□□□□□ -1.89
MSH6P52701 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.23□□□□□ -1.89
MSH6P52701 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH6P52701 AC005776.1-201ENST00000603164 290 ntBASIC3.23□□□□□ -1.89
MSH6P52701 AC018754.1-201ENST00000607486 925 ntBASIC3.23□□□□□ -1.89
MSH6P52701 MIR4496-201ENST00000635896 61 ntBASIC3.23□□□□□ -1.89
MSH6P52701 MIR219B-201ENST00000637023 88 ntBASIC3.23□□□□□ -1.89
MSH6P52701 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.23□□□□□ -1.89
MSH6P52701 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSH6P52701 MTCO1P6-201ENST00000481192 1384 ntBASIC3.22□□□□□ -1.89
MSH6P52701 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.22□□□□□ -1.89
MSH6P52701 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH6P52701 RNU1-17P-201ENST00000363022 152 ntBASIC3.22□□□□□ -1.89
MSH6P52701 Y_RNA.508-201ENST00000384502 114 ntBASIC3.22□□□□□ -1.89
MSH6P52701 MIR525-201ENST00000384978 85 ntBASIC3.22□□□□□ -1.89
MSH6P52701 SNORD65C-201ENST00000390962 71 ntBASIC3.22□□□□□ -1.89
MSH6P52701 RNA5SP213-201ENST00000391031 106 ntBASIC3.22□□□□□ -1.89
MSH6P52701 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH6P52701 HMGB1P45-201ENST00000435986 653 ntBASIC3.22□□□□□ -1.89
MSH6P52701 YWHAZP8-201ENST00000436935 731 ntBASIC3.22□□□□□ -1.89
MSH6P52701 MUPP-201ENST00000438111 566 ntBASIC3.22□□□□□ -1.89
MSH6P52701 RAB11AP1-201ENST00000442978 646 ntBASIC3.22□□□□□ -1.89
MSH6P52701 Z77249.1-201ENST00000444622 1175 ntBASIC3.22□□□□□ -1.89
MSH6P52701 COX6CP2-201ENST00000444980 225 ntBASIC3.22□□□□□ -1.89
MSH6P52701 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH6P52701 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH6P52701 GTF2IP12-201ENST00000456547 356 ntBASIC3.22□□□□□ -1.89
MSH6P52701 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.22□□□□□ -1.89
MSH6P52701 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.22□□□□□ -1.89
MSH6P52701 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH6P52701 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
MSH6P52701 AC008628.1-201ENST00000508663 265 ntBASIC3.22□□□□□ -1.89
MSH6P52701 SCARNA17.1-201ENST00000516211 143 ntBASIC3.22□□□□□ -1.89
MSH6P52701 SCARNA17.2-201ENST00000516334 143 ntBASIC3.22□□□□□ -1.89
MSH6P52701 AF279873.1-201ENST00000523393 313 ntBASIC3.22□□□□□ -1.89
MSH6P52701 MTCYBP20-201ENST00000524239 1129 ntBASIC3.22□□□□□ -1.89
MSH6P52701 ELOCP31-201ENST00000540463 467 ntBASIC3.22□□□□□ -1.89
MSH6P52701 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH6P52701 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH6P52701 AC004217.3-201ENST00000551552 878 ntBASIC3.22□□□□□ -1.89
MSH6P52701 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH6P52701 AC025281.1-201ENST00000567026 265 ntBASIC3.22□□□□□ -1.89
MSH6P52701 SCARNA17.4-201ENST00000614296 143 ntBASIC3.22□□□□□ -1.89
MSH6P52701 AC006065.5-201ENST00000623427 349 ntBASIC3.22□□□□□ -1.89
MSH6P52701 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH6P52701 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
MSH6P52701 Y_RNA.110-201ENST00000363220 99 ntBASIC3.21□□□□□ -1.9
MSH6P52701 RNA5SP189-201ENST00000364920 115 ntBASIC3.21□□□□□ -1.9
MSH6P52701 RNU6-1151P-201ENST00000384684 107 ntBASIC3.21□□□□□ -1.9
MSH6P52701 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
MSH6P52701 RNU6-77P-201ENST00000410554 91 ntBASIC3.21□□□□□ -1.9
MSH6P52701 BX664727.1-201ENST00000416024 466 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.21□□□□□ -1.9
MSH6P52701 UBE2D3P3-201ENST00000426992 425 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH6P52701 RPL23AP33-201ENST00000442301 452 ntBASIC3.21□□□□□ -1.9
MSH6P52701 RPL39P40-201ENST00000445481 146 ntBASIC3.21□□□□□ -1.9
MSH6P52701 MOB1AP2-201ENST00000446060 614 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AL096803.2-201ENST00000450032 677 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH6P52701 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH6P52701 AC124293.1-201ENST00000530034 493 ntBASIC3.21□□□□□ -1.9
MSH6P52701 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH6P52701 AC023043.3-201ENST00000593113 385 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH6P52701 AP004247.3-201ENST00000608682 624 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AC112503.2-201ENST00000609005 552 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AL391813.2-201ENST00000609113 322 ntBASIC3.21□□□□□ -1.9
MSH6P52701 BX664608.1-201ENST00000610519 487 ntBASIC3.21□□□□□ -1.9
MSH6P52701 AC002076.2-201ENST00000617362 122 ntBASIC3.21□□□□□ -1.9
MSH6P52701 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH6P52701 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
MSH6P52701 MTND5P28-201ENST00000438005 1594 ntBASIC3.21□□□□□ -1.9
MSH6P52701 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
MSH6P52701 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms