Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 OR4K8P-201ENST00000578842 1048 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 MIR4443-201ENST00000585052 53 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXA1P49639 AP003465.2-201ENST00000602571 373 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 LLPHP1-201ENST00000603571 367 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC104662.1-201ENST00000604448 511 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AL359999.1-201ENST00000604513 294 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC103710.1-201ENST00000610003 901 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC092794.1-201ENST00000612734 582 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC091953.3-201ENST00000623220 236 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AL159972.1-201ENST00000625150 448 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 PISRT1-201ENST00000626175 531 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA1P49639 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.34□□□□□ -1.88
HOXA1P49639 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.34□□□□□ -1.88
HOXA1P49639 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.34□□□□□ -1.88
HOXA1P49639 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXA1P49639 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.34□□□□□ -1.88
HOXA1P49639 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
HOXA1P49639 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 MIR591-201ENST00000385290 95 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 U3.20-201ENST00000390909 217 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 SNORA48.8-201ENST00000391324 134 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 AL356387.2-201ENST00000422272 243 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 RPS27AP12-201ENST00000429552 465 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 MRPS18BP2-201ENST00000434310 759 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXA1P49639 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 TPT1P13-201ENST00000449760 499 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AC098824.1-201ENST00000453565 980 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 AP1S2P1-201ENST00000457344 379 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 RPS29P22-201ENST00000472363 168 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 RBM43P1-201ENST00000476891 1081 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 RPS3AP14-201ENST00000483907 780 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AF213884.1-201ENST00000488102 463 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 RPL7P24-201ENST00000493052 752 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 RPL29P14-201ENST00000495837 428 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXA1P49639 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 RNU6-718P-201ENST00000516166 105 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 RNU6-314P-201ENST00000516574 104 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 RNU6-798P-201ENST00000516912 103 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 RNU6-201P-201ENST00000517100 61 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 OR5G4P-201ENST00000525251 760 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 AC126177.3-201ENST00000551839 688 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA1P49639 TPRKBP2-201ENST00000565969 475 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 MTATP6P3-201ENST00000581686 676 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 AC112230.1-201ENST00000604342 547 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 RNU6-87P-201ENST00000607561 108 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AC007684.1-201ENST00000609671 477 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AL590282.1-201ENST00000610379 1136 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AL591424.2-201ENST00000617023 128 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AL158209.2-201ENST00000619266 216 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AL445363.3-201ENST00000623080 671 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 MFSD8-236ENST00000641509 4050 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA1P49639 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA1P49639 FARSBP1-201ENST00000435808 1778 ntBASIC3.33□□□□□ -1.88
HOXA1P49639 AC006504.1-201ENST00000562493 3666 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA1P49639 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA1P49639 AL021368.2-201ENST00000606125 5352 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA1P49639 AC079741.1-201ENST00000321498 212 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HOXA1P49639 SNORD35B-201ENST00000363660 87 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 RNU6-282P-201ENST00000365357 103 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 Y_RNA.372-201ENST00000365599 102 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 RNU6-780P-201ENST00000391030 104 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HOXA1P49639 MIR1250-201ENST00000408098 113 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA1P49639 AC127391.1-201ENST00000411737 98 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 FAR2P2-201ENST00000413041 594 ntBASIC3.32□□□□□ -1.88
HOXA1P49639 RAD23BP2-201ENST00000416003 1207 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms