Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.18□□□□□ -1.42
COL9A1P20849 RNU6-143P-201ENST00000516942 93 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.18□□□□□ -1.42
COL9A1P20849 AP001284.1-201ENST00000528393 2118 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC073916.1-201ENST00000545095 130 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 IGBP1P1-201ENST00000554337 1009 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC103996.1-201ENST00000555468 102 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC6.18□□□□□ -1.42
COL9A1P20849 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC6.18□□□□□ -1.42
COL9A1P20849 AC209154.1-201ENST00000582156 337 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 MIR4298-201ENST00000584380 73 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC008749.1-201ENST00000597650 306 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC234771.5-201ENST00000600161 514 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AL136131.3-201ENST00000607600 188 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.18□□□□□ -1.42
COL9A1P20849 AP002799.1-201ENST00000623552 423 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
COL9A1P20849 BIN2P1-201ENST00000504996 1530 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
COL9A1P20849 AL731532.2-201ENST00000623542 1953 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
COL9A1P20849 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.18□□□□□ -1.42
COL9A1P20849 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.18□□□□□ -1.42
COL9A1P20849 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.18□□□□□ -1.42
COL9A1P20849 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 TNPO1P2-201ENST00000426249 2665 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
COL9A1P20849 RNU6-898P-201ENST00000365627 104 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 MIR539-201ENST00000365690 78 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 RPS4XP3-201ENST00000398541 413 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC6.17□□□□□ -1.42
COL9A1P20849 AL451062.2-201ENST00000427515 271 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.17□□□□□ -1.42
COL9A1P20849 AC016925.1-201ENST00000458303 298 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 RN7SL583P-201ENST00000475692 287 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 RPL23AP45-201ENST00000476406 468 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 RPS4XP22-201ENST00000480755 780 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 AC008897.1-201ENST00000494006 347 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 APOOP4-201ENST00000513530 597 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.17□□□□□ -1.42
COL9A1P20849 RNU6-971P-201ENST00000516920 106 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC6.17□□□□□ -1.42
COL9A1P20849 RPL21P9-201ENST00000556149 474 ntBASIC6.17□□□□□ -1.42
COL9A1P20849 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC6.17□□□□□ -1.42
COL9A1P20849 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
COL9A1P20849 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC6.17□□□□□ -1.42
COL9A1P20849 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL9A1P20849 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC6.17□□□□□ -1.42
COL9A1P20849 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL9A1P20849 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.17□□□□□ -1.42
COL9A1P20849 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.17□□□□□ -1.42
COL9A1P20849 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL9A1P20849 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC6.17□□□□□ -1.42
COL9A1P20849 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL9A1P20849 MAPK10-344ENST00000641718 3746 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL9A1P20849 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL9A1P20849 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC6.16□□□□□ -1.42
COL9A1P20849 AC007938.2-201ENST00000604666 2634 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL9A1P20849 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL9A1P20849 Y_RNA.7-201ENST00000362352 102 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 Y_RNA.123-201ENST00000363338 102 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL9A1P20849 Y_RNA.446-201ENST00000384178 104 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 MIR433-201ENST00000384837 93 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 RPL35AP3-201ENST00000414680 288 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.16□□□□□ -1.42
COL9A1P20849 CYCSP12-201ENST00000437729 300 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 RPS15AP7-201ENST00000439294 405 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 GAPDHP25-201ENST00000447061 1001 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 RPS23P7-201ENST00000466210 444 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 RN7SL269P-201ENST00000467795 305 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 AC022795.1-201ENST00000473808 480 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 AC117440.1-201ENST00000474107 571 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 CYCTP-201ENST00000504253 315 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC6.16□□□□□ -1.42
COL9A1P20849 AC093840.1-201ENST00000511599 336 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 SCARNA13-201ENST00000516672 275 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 IGKV2D-36-201ENST00000518643 226 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC6.16□□□□□ -1.42
COL9A1P20849 AP002001.1-203ENST00000534002 267 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.16□□□□□ -1.42
COL9A1P20849 AL157871.3-201ENST00000557231 293 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 RNU4ATAC-201ENST00000580972 127 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 AL670379.2-201ENST00000604983 252 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 RN7SL544P-201ENST00000617232 284 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms