Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HMGA1P17096 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.8□□□□□ -2.12
HMGA1P17096 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
HMGA1P17096 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.79□□□□□ -2.12
HMGA1P17096 RNA5SP489-201ENST00000410986 109 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.79□□□□□ -2.12
HMGA1P17096 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.79□□□□□ -2.12
HMGA1P17096 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.79□□□□□ -2.12
HMGA1P17096 Z96811.1-201ENST00000445880 108 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC1.79□□□□□ -2.12
HMGA1P17096 CDC42P1-201ENST00000456658 548 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.79□□□□□ -2.12
HMGA1P17096 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.79□□□□□ -2.12
HMGA1P17096 AC109471.1-201ENST00000511631 612 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.79□□□□□ -2.12
HMGA1P17096 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.79□□□□□ -2.12
HMGA1P17096 MIR4446-201ENST00000578505 67 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.79□□□□□ -2.12
HMGA1P17096 AC128687.1-201ENST00000605304 619 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 HSPE1P14-201ENST00000605812 302 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 AC006023.2-201ENST00000609916 167 ntBASIC1.79□□□□□ -2.12
HMGA1P17096 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
HMGA1P17096 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
HMGA1P17096 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
HMGA1P17096 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC1.78□□□□□ -2.12
HMGA1P17096 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.78□□□□□ -2.12
HMGA1P17096 SNORA51.11-201ENST00000384442 131 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 AL021407.1-201ENST00000404531 386 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
HMGA1P17096 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.78□□□□□ -2.12
HMGA1P17096 MTCYBP45-201ENST00000435243 565 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 NDUFB4P6-201ENST00000436819 366 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 RNU6-1218P-201ENST00000458990 108 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 RPL21P103-201ENST00000479921 488 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC1.78□□□□□ -2.12
HMGA1P17096 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.78□□□□□ -2.12
HMGA1P17096 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.78□□□□□ -2.12
HMGA1P17096 KATNBL1P1-201ENST00000605192 748 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.78□□□□□ -2.12
HMGA1P17096 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGA1P17096 AC006065.5-201ENST00000623427 349 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 AP000676.4-201ENST00000624659 623 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 HPVC1-201ENST00000629899 1198 ntBASIC1.78□□□□□ -2.12
HMGA1P17096 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.78□□□□□ -2.12
HMGA1P17096 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
HMGA1P17096 RNU6-661P-201ENST00000362409 107 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 U8.10-201ENST00000384260 133 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 VTA1P1-201ENST00000414044 866 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.77□□□□□ -2.13
HMGA1P17096 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HMGA1P17096 RPL23AP58-201ENST00000440453 469 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HMGA1P17096 SSXP1-201ENST00000453640 473 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 RN7SKP210-201ENST00000459176 261 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 RPL37P25-201ENST00000507308 276 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
HMGA1P17096 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.77□□□□□ -2.13
HMGA1P17096 SCARNA17.1-201ENST00000516211 143 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 SCARNA17.2-201ENST00000516334 143 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.77□□□□□ -2.13
HMGA1P17096 CBX3P4-201ENST00000538909 354 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HMGA1P17096 AC011611.5-201ENST00000552477 578 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.77□□□□□ -2.13
HMGA1P17096 AL049838.1-201ENST00000563647 981 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 MYL12BP1-201ENST00000569826 507 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 AC104581.2-201ENST00000572227 430 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC1.77□□□□□ -2.13
HMGA1P17096 AL035411.2-201ENST00000604022 421 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 MIR502-201ENST00000606349 86 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 SCARNA17.4-201ENST00000614296 143 ntBASIC1.77□□□□□ -2.13
HMGA1P17096 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
HMGA1P17096 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
HMGA1P17096 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.76□□□□□ -2.13
HMGA1P17096 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.76□□□□□ -2.13
HMGA1P17096 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC1.76□□□□□ -2.13
HMGA1P17096 NCOR1P1-202ENST00000486162 291 ntBASIC1.76□□□□□ -2.13
HMGA1P17096 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HMGA1P17096 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.76□□□□□ -2.13
HMGA1P17096 RNA5SP82-201ENST00000516707 92 ntBASIC1.76□□□□□ -2.13
HMGA1P17096 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.76□□□□□ -2.13
HMGA1P17096 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HMGA1P17096 MIR4303-201ENST00000581299 66 ntBASIC1.76□□□□□ -2.13
HMGA1P17096 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.76□□□□□ -2.13
HMGA1P17096 AC020895.1-201ENST00000595362 272 ntBASIC1.76□□□□□ -2.13
HMGA1P17096 AC091046.2-201ENST00000620775 665 ntBASIC1.76□□□□□ -2.13
HMGA1P17096 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HMGA1P17096 AC103710.2-202ENST00000641454 2853 ntBASIC1.75□□□□□ -2.13
HMGA1P17096 SNORA51.2-201ENST00000364595 132 ntBASIC1.75□□□□□ -2.13
HMGA1P17096 SNORD48-201ENST00000364953 64 ntBASIC1.75□□□□□ -2.13
HMGA1P17096 SNORA67.5-201ENST00000391036 107 ntBASIC1.75□□□□□ -2.13
HMGA1P17096 ATP5F1P6-201ENST00000402768 767 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 135.4 ms