Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC068446.3-201ENST00000555285 382 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC090517.1-201ENST00000569307 266 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 MIR3910-1-201ENST00000580936 111 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC012433.1-201ENST00000588916 398 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC025574.2-201ENST00000615621 514 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AL359547.2-201ENST00000615810 418 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC007998.5-201ENST00000622938 237 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 OR9K1P-202ENST00000641111 3217 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 STX3-208ENST00000641815 3236 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC008669.1-201ENST00000565823 2178 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-212P-201ENST00000362642 104 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.48-201ENST00000362710 103 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RNU4-42P-201ENST00000364738 142 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RNA5SP131-201ENST00000365452 119 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-821P-201ENST00000390995 107 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC110754.1-201ENST00000399740 601 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AP000580.1-201ENST00000404439 358 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 GPS2P1-201ENST00000411761 986 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RAC1P3-201ENST00000416129 580 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC108032.1-201ENST00000416706 207 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 BX276092.3-201ENST00000424182 230 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AL389925.1-201ENST00000432257 728 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RPL12P18-201ENST00000437175 325 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AP006222.1-205ENST00000450734 457 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RNU7-169P-201ENST00000459456 61 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC094085.1-201ENST00000468914 584 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC010631.1-201ENST00000474150 156 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RN7SL583P-201ENST00000475692 287 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC092436.3-201ENST00000511788 257 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 SNORA40.14-201ENST00000516543 86 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 RNA5SP271-201ENST00000516700 88 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC022080.3-201ENST00000544433 482 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC006600.1-201ENST00000572529 153 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 uc_338.7-201ENST00000621834 124 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 ABCC13-202ENST00000463099 3842 ntBASIC5□□□□□ -1.61
HIF3AQ9Y2N7 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5□□□□□ -1.61
HIF3AQ9Y2N7 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 MIR133A2-201ENST00000347538 102 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.276-201ENST00000364732 109 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-701P-201ENST00000384059 107 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-187P-201ENST00000384139 106 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 SNORA51.11-201ENST00000384442 131 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 SNORD56.6-201ENST00000384569 71 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 PPIAP9-201ENST00000403866 498 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 GNG5P5-201ENST00000420444 220 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 RN7SL72P-201ENST00000460697 269 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 RPL7P5-201ENST00000471472 736 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 RPL7P23-201ENST00000493874 747 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms