Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC019155.1-201ENST00000382242 574 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 SNORA70.10-201ENST00000384515 134 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RNU6-308P-201ENST00000390957 107 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 SNORA77-201ENST00000408716 125 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RN7SKP16-201ENST00000410180 299 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 PMCHL1-202ENST00000423102 261 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 PSMD10P3-201ENST00000437000 448 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RPL12P3-201ENST00000440080 396 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 HMGB1P25-201ENST00000468402 607 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RPL21P93-201ENST00000480465 489 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RN7SL432P-201ENST00000484057 298 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RN7SL441P-201ENST00000492388 296 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC025164.1-201ENST00000496249 478 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC140172.1-201ENST00000502928 141 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC098591.2-201ENST00000510152 315 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RNU6-189P-201ENST00000516120 101 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RNU6-1046P-201ENST00000516538 107 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC022634.1-201ENST00000520765 532 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC100870.1-201ENST00000522035 505 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AP000676.2-201ENST00000529711 301 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 DNAJC8P1-201ENST00000554535 372 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC233702.9-201ENST00000581528 203 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 MIR5690-201ENST00000583739 73 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC011487.3-201ENST00000593607 453 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 XIAPP1-201ENST00000603162 600 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC010205.1-201ENST00000616668 449 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AL078596.1-201ENST00000624856 447 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC104118.1-201ENST00000607625 1589 ntBASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD1Q96NR3 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
PTCHD1Q96NR3 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
PTCHD1Q96NR3 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
PTCHD1Q96NR3 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
PTCHD1Q96NR3 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 XIAPP3-201ENST00000312918 795 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RNU4-44P-201ENST00000363050 141 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RNU6-1188P-201ENST00000363795 107 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 Y_RNA.212-201ENST00000364177 102 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 Y_RNA.493-201ENST00000384422 102 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RNU6-821P-201ENST00000390995 107 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RNU4-65P-201ENST00000410473 140 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RAC1P6-201ENST00000423911 575 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 PSMA2P3-201ENST00000429685 675 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RPS27P18-201ENST00000431701 247 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AF228730.2-201ENST00000438784 848 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC234775.1-201ENST00000454247 670 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 SCARNA18-201ENST00000459004 134 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 Y_RNA.653-201ENST00000459091 95 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC116533.1-201ENST00000459748 321 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RN7SL826P-201ENST00000479724 288 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RPS27P27-201ENST00000498779 255 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC021146.2-201ENST00000504736 556 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 HIGD1AP3-201ENST00000515857 278 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 HMGB1P19-201ENST00000517578 577 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AP001922.4-201ENST00000526967 290 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 RANP3-201ENST00000530970 276 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AL355836.1-201ENST00000555951 870 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 DUSP12P1-201ENST00000612874 516 ntBASIC4.71□□□□□ -1.66
PTCHD1Q96NR3 SNHG22-203ENST00000617833 660 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms