Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LSM4Q9Y4Z0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 OR2A1-AS1-207ENST00000486094 819 ntBASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 AC018553.1-201ENST00000616682 1458 ntBASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 AL031598.1-201ENST00000561511 1773 ntBASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LSM4Q9Y4Z0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 HES2-205ENST00000487437 968 ntTSL 3 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 SLC29A4P2-201ENST00000504749 1089 ntBASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 REXO2-208ENST00000539754 791 ntTSL 2 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 Z99916.2-201ENST00000604037 246 ntBASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 AC116351.2-201ENST00000606540 1585 ntBASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 AC135050.7-201ENST00000624508 2218 ntBASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 AC093525.10-201ENST00000625130 1569 ntBASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
LSM4Q9Y4Z0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LSM4Q9Y4Z0 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms