Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL353708.3-201ENST00000610272 989 ntBASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 IRX1P1-201ENST00000438849 1838 ntBASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 AC087289.5-201ENST00000586076 3175 ntBASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 NIFKP9-201ENST00000419265 221 ntBASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 C1QBPP2-201ENST00000528754 825 ntBASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 MIR4651-201ENST00000582622 73 ntBASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 AC131212.4-201ENST00000623606 975 ntBASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
VPS9D1Q9Y2B5 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 AP002982.1-201ENST00000492365 877 ntBASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS9D1Q9Y2B5 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS9D1Q9Y2B5 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 BCL2-203ENST00000589955 5011 ntBASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 KSR1P1-201ENST00000446298 240 ntBASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 ITM2C-210ENST00000620962 501 ntBASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 Z99916.3-201ENST00000623422 1080 ntBASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS9D1Q9Y2B5 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS9D1Q9Y2B5 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS9D1Q9Y2B5 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS9D1Q9Y2B5 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS9D1Q9Y2B5 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS9D1Q9Y2B5 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VPS9D1Q9Y2B5 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS9D1Q9Y2B5 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms