Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP42Q9H9J4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP42Q9H9J4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC24.37■■□□□ 1.49
USP42Q9H9J4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC24.37■■□□□ 1.49
USP42Q9H9J4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP42Q9H9J4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP42Q9H9J4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP42Q9H9J4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP42Q9H9J4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP42Q9H9J4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP42Q9H9J4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC24.36■■□□□ 1.49
USP42Q9H9J4 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP42Q9H9J4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP42Q9H9J4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
USP42Q9H9J4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC24.35■■□□□ 1.49
USP42Q9H9J4 MIR4674-201ENST00000582457 87 ntBASIC24.35■■□□□ 1.49
USP42Q9H9J4 FGF14-AS2-201ENST00000606448 1074 ntBASIC24.35■■□□□ 1.49
USP42Q9H9J4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC24.35■■□□□ 1.49
USP42Q9H9J4 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
USP42Q9H9J4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC24.35■■□□□ 1.49
USP42Q9H9J4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC24.35■■□□□ 1.49
USP42Q9H9J4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP42Q9H9J4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP42Q9H9J4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP42Q9H9J4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC24.34■■□□□ 1.49
USP42Q9H9J4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP42Q9H9J4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP42Q9H9J4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC24.34■■□□□ 1.49
USP42Q9H9J4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP42Q9H9J4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC24.34■■□□□ 1.49
USP42Q9H9J4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC24.34■■□□□ 1.49
USP42Q9H9J4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USP42Q9H9J4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP42Q9H9J4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP42Q9H9J4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
USP42Q9H9J4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC24.33■■□□□ 1.49
USP42Q9H9J4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
USP42Q9H9J4 AC009237.14-201ENST00000609975 1594 ntBASIC24.33■■□□□ 1.48
USP42Q9H9J4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
USP42Q9H9J4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
USP42Q9H9J4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
USP42Q9H9J4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC24.33■■□□□ 1.48
USP42Q9H9J4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC24.33■■□□□ 1.48
USP42Q9H9J4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
USP42Q9H9J4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
USP42Q9H9J4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
USP42Q9H9J4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP42Q9H9J4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.31■■□□□ 1.48
USP42Q9H9J4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
USP42Q9H9J4 GOLGA2P11-201ENST00000562660 1621 ntBASIC24.31■■□□□ 1.48
USP42Q9H9J4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC24.31■■□□□ 1.48
USP42Q9H9J4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 LBX2-AS1-202ENST00000603175 2083 ntBASIC24.31■■□□□ 1.48
USP42Q9H9J4 HBZP1-201ENST00000354915 429 ntBASIC24.31■■□□□ 1.48
USP42Q9H9J4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 AC246785.2-201ENST00000432512 513 ntBASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms