Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC31.8■■■□□ 2.68
IFT140Q96RY7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
IFT140Q96RY7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
IFT140Q96RY7 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC31.79■■■□□ 2.68
IFT140Q96RY7 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC31.79■■■□□ 2.68
IFT140Q96RY7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC31.79■■■□□ 2.68
IFT140Q96RY7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
IFT140Q96RY7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
IFT140Q96RY7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
IFT140Q96RY7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 AL031284.1-201ENST00000419297 478 ntBASIC31.78■■■□□ 2.68
IFT140Q96RY7 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 MCCD1P1-208ENST00000445732 328 ntBASIC31.78■■■□□ 2.68
IFT140Q96RY7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 CCNC-219ENST00000627680 896 ntTSL 5 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC31.78■■■□□ 2.68
IFT140Q96RY7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC31.78■■■□□ 2.68
IFT140Q96RY7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
IFT140Q96RY7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
IFT140Q96RY7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
IFT140Q96RY7 MOK-208ENST00000519058 917 ntTSL 2 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
IFT140Q96RY7 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC31.78■■■□□ 2.68
IFT140Q96RY7 AL592071.1-201ENST00000611956 408 ntBASIC31.78■■■□□ 2.68
IFT140Q96RY7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
IFT140Q96RY7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
IFT140Q96RY7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
IFT140Q96RY7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
IFT140Q96RY7 GOLGA2P11-201ENST00000562660 1621 ntBASIC31.77■■■□□ 2.68
IFT140Q96RY7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
IFT140Q96RY7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC31.77■■■□□ 2.68
IFT140Q96RY7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC31.76■■■□□ 2.68
IFT140Q96RY7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.68
IFT140Q96RY7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC31.76■■■□□ 2.68
IFT140Q96RY7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
IFT140Q96RY7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
IFT140Q96RY7 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC31.76■■■□□ 2.67
IFT140Q96RY7 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
IFT140Q96RY7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC31.76■■■□□ 2.67
IFT140Q96RY7 NSUN5P1-202ENST00000421140 1535 ntBASIC31.76■■■□□ 2.67
IFT140Q96RY7 NSUN5P2-203ENST00000457352 1529 ntBASIC31.76■■■□□ 2.67
IFT140Q96RY7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC31.75■■■□□ 2.67
IFT140Q96RY7 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC31.75■■■□□ 2.67
IFT140Q96RY7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC31.75■■■□□ 2.67
IFT140Q96RY7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC31.75■■■□□ 2.67
IFT140Q96RY7 AP005901.3-202ENST00000581653 237 ntBASIC31.75■■■□□ 2.67
IFT140Q96RY7 AC005332.3-201ENST00000589904 676 ntBASIC31.75■■■□□ 2.67
IFT140Q96RY7 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
IFT140Q96RY7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC31.75■■■□□ 2.67
IFT140Q96RY7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC31.74■■■□□ 2.67
IFT140Q96RY7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC31.74■■■□□ 2.67
IFT140Q96RY7 EMD-201ENST00000369835 966 ntTSL 3 BASIC31.74■■■□□ 2.67
IFT140Q96RY7 MED22-202ENST00000371999 987 ntTSL 3 BASIC31.74■■■□□ 2.67
IFT140Q96RY7 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 PMS2P7-201ENST00000506558 1336 ntBASIC31.74■■■□□ 2.67
IFT140Q96RY7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC31.74■■■□□ 2.67
IFT140Q96RY7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
IFT140Q96RY7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
IFT140Q96RY7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC31.73■■■□□ 2.67
IFT140Q96RY7 NUS1P2-201ENST00000417358 873 ntBASIC31.73■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms