Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC083849.1-201ENST00000615227 514 ntBASIC19.2■□□□□ 0.66
HMGB4Q8WW32 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGB4Q8WW32 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HMGB4Q8WW32 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB4Q8WW32 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 AL162377.1-201ENST00000618844 1793 ntBASIC19.19■□□□□ 0.66
HMGB4Q8WW32 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 LINC01311-201ENST00000565162 1445 ntBASIC19.19■□□□□ 0.66
HMGB4Q8WW32 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.19■□□□□ 0.66
HMGB4Q8WW32 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 STARP1-201ENST00000397973 869 ntBASIC19.19■□□□□ 0.66
HMGB4Q8WW32 DUSP5P1-201ENST00000441325 1139 ntBASIC19.19■□□□□ 0.66
HMGB4Q8WW32 MIR4674-201ENST00000582457 87 ntBASIC19.19■□□□□ 0.66
HMGB4Q8WW32 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.19■□□□□ 0.66
HMGB4Q8WW32 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGB4Q8WW32 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB4Q8WW32 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 SPDYE15P-201ENST00000424157 909 ntBASIC19.17■□□□□ 0.66
HMGB4Q8WW32 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB4Q8WW32 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 AC092667.1-201ENST00000434301 2586 ntBASIC19.16■□□□□ 0.66
HMGB4Q8WW32 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 CLEC4GP1-201ENST00000596555 870 ntBASIC19.16■□□□□ 0.66
HMGB4Q8WW32 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 HYMAI.1-201ENST00000620949 238 ntBASIC19.16■□□□□ 0.66
HMGB4Q8WW32 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HMGB4Q8WW32 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms