Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 AP000523.1-201ENST00000398242 1049 ntBASIC18.65■□□□□ 0.58
LMX1AQ8TE12 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1AQ8TE12 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
LMX1AQ8TE12 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LMX1AQ8TE12 SDHAP1-207ENST00000440850 2000 ntBASIC18.64■□□□□ 0.58
LMX1AQ8TE12 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 TSPY23P-201ENST00000440136 739 ntBASIC18.64■□□□□ 0.57
LMX1AQ8TE12 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1AQ8TE12 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 AL671277.2-201ENST00000458060 996 ntBASIC18.63■□□□□ 0.57
LMX1AQ8TE12 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.63■□□□□ 0.57
LMX1AQ8TE12 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1AQ8TE12 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 TSPY21P-201ENST00000433481 731 ntBASIC18.62■□□□□ 0.57
LMX1AQ8TE12 MIR4674-201ENST00000582457 87 ntBASIC18.62■□□□□ 0.57
LMX1AQ8TE12 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.62■□□□□ 0.57
LMX1AQ8TE12 AP000550.4-202ENST00000639755 178 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms