Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TUBB8P6-201ENST00000436895 1288 ntBASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 AC142086.2-201ENST00000569753 217 ntBASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 IRX1P1-201ENST00000438849 1838 ntBASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLHC1Q8NHS4 AC104581.1-202ENST00000635932 2618 ntBASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 UNC93B4-201ENST00000505679 747 ntBASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLHC1Q8NHS4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLHC1Q8NHS4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms