Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 AP003071.4-201ENST00000562276 1284 ntBASIC18.74■□□□□ 0.59
VRK3Q8IV63 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 AL596275.1-201ENST00000423464 877 ntBASIC18.73■□□□□ 0.59
VRK3Q8IV63 AL355355.2-201ENST00000442321 338 ntBASIC18.73■□□□□ 0.59
VRK3Q8IV63 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VRK3Q8IV63 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.73■□□□□ 0.59
VRK3Q8IV63 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.72■□□□□ 0.59
VRK3Q8IV63 FSCN1P1-201ENST00000568912 1481 ntBASIC18.72■□□□□ 0.59
VRK3Q8IV63 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 TSPY21P-201ENST00000433481 731 ntBASIC18.72■□□□□ 0.59
VRK3Q8IV63 MIR4497-201ENST00000583208 89 ntBASIC18.72■□□□□ 0.59
VRK3Q8IV63 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 AP000974.1-201ENST00000623909 2387 ntBASIC18.72■□□□□ 0.59
VRK3Q8IV63 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK3Q8IV63 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.72■□□□□ 0.59
VRK3Q8IV63 FP475955.4-201ENST00000623131 1990 ntBASIC18.72■□□□□ 0.59
VRK3Q8IV63 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 AC098818.2-201ENST00000564925 2320 ntBASIC18.71■□□□□ 0.59
VRK3Q8IV63 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 TSPY15P-201ENST00000457163 923 ntBASIC18.71■□□□□ 0.59
VRK3Q8IV63 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VRK3Q8IV63 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.71■□□□□ 0.59
VRK3Q8IV63 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
VRK3Q8IV63 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms