Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
KRT39Q6A163 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
KRT39Q6A163 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.7■□□□□ 0.9
KRT39Q6A163 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
KRT39Q6A163 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 FEM1AP3-201ENST00000403722 1741 ntBASIC20.7■□□□□ 0.9
KRT39Q6A163 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT39Q6A163 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
KRT39Q6A163 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 RCC2P6-201ENST00000526625 1557 ntBASIC20.69■□□□□ 0.9
KRT39Q6A163 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 FAM197Y1-201ENST00000421178 764 ntBASIC20.69■□□□□ 0.9
KRT39Q6A163 TSPY23P-201ENST00000440136 739 ntBASIC20.69■□□□□ 0.9
KRT39Q6A163 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.69■□□□□ 0.9
KRT39Q6A163 CD177P1-201ENST00000606252 935 ntBASIC20.69■□□□□ 0.9
KRT39Q6A163 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
KRT39Q6A163 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
KRT39Q6A163 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.69■□□□□ 0.9
KRT39Q6A163 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.69■□□□□ 0.9
KRT39Q6A163 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
KRT39Q6A163 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.69■□□□□ 0.9
KRT39Q6A163 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT39Q6A163 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.68■□□□□ 0.9
KRT39Q6A163 AL049812.1-201ENST00000432563 2267 ntBASIC20.68■□□□□ 0.9
KRT39Q6A163 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.68■□□□□ 0.9
KRT39Q6A163 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
KRT39Q6A163 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
KRT39Q6A163 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.68■□□□□ 0.9
KRT39Q6A163 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.68■□□□□ 0.9
KRT39Q6A163 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.68■□□□□ 0.9
KRT39Q6A163 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.68■□□□□ 0.9
KRT39Q6A163 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.68■□□□□ 0.9
KRT39Q6A163 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.68■□□□□ 0.9
KRT39Q6A163 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.68■□□□□ 0.9
KRT39Q6A163 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.68■□□□□ 0.9
KRT39Q6A163 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.68■□□□□ 0.9
KRT39Q6A163 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT39Q6A163 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.67■□□□□ 0.9
KRT39Q6A163 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
KRT39Q6A163 AC004951.3-201ENST00000418645 1148 ntBASIC20.67■□□□□ 0.9
KRT39Q6A163 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.67■□□□□ 0.9
KRT39Q6A163 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.67■□□□□ 0.9
KRT39Q6A163 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.67■□□□□ 0.9
KRT39Q6A163 Z99916.2-201ENST00000604037 246 ntBASIC20.67■□□□□ 0.9
KRT39Q6A163 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.67■□□□□ 0.9
KRT39Q6A163 AC113410.3-201ENST00000623366 203 ntBASIC20.67■□□□□ 0.9
KRT39Q6A163 AL049637.2-201ENST00000641778 930 ntBASIC20.67■□□□□ 0.9
KRT39Q6A163 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
KRT39Q6A163 AC098818.2-201ENST00000564925 2320 ntBASIC20.67■□□□□ 0.9
KRT39Q6A163 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.67■□□□□ 0.9
KRT39Q6A163 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
KRT39Q6A163 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT39Q6A163 AC087289.5-201ENST00000586076 3175 ntBASIC20.67■□□□□ 0.9
KRT39Q6A163 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT39Q6A163 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT39Q6A163 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
KRT39Q6A163 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
KRT39Q6A163 AC091390.4-202ENST00000476426 537 ntBASIC20.66■□□□□ 0.9
KRT39Q6A163 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.66■□□□□ 0.9
KRT39Q6A163 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT39Q6A163 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.66■□□□□ 0.9
KRT39Q6A163 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
KRT39Q6A163 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
KRT39Q6A163 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.66■□□□□ 0.9
KRT39Q6A163 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms