Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
VPS13DQ5THJ4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC12.9□□□□□ -0.34
VPS13DQ5THJ4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
VPS13DQ5THJ4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
VPS13DQ5THJ4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
VPS13DQ5THJ4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC12.9□□□□□ -0.35
VPS13DQ5THJ4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
VPS13DQ5THJ4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 TSSC2-201ENST00000450217 709 ntBASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 SLC25A6P4-201ENST00000586535 553 ntBASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 AKR1C7P-201ENST00000305623 895 ntBASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS13DQ5THJ4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 AC092667.1-201ENST00000434301 2586 ntBASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 SDHAP1-207ENST00000440850 2000 ntBASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS13DQ5THJ4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 TK1-205ENST00000590862 642 ntTSL 3 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS13DQ5THJ4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms