Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CX3CR1P49238 AC093503.3-201ENST00000624917 2352 ntBASIC16.82■□□□□ 0.28
CX3CR1P49238 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CX3CR1P49238 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.82■□□□□ 0.28
CX3CR1P49238 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
CX3CR1P49238 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
CX3CR1P49238 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.82■□□□□ 0.28
CX3CR1P49238 AP003097.1-201ENST00000530657 1135 ntBASIC16.82■□□□□ 0.28
CX3CR1P49238 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.82■□□□□ 0.28
CX3CR1P49238 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.82■□□□□ 0.28
CX3CR1P49238 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CX3CR1P49238 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CX3CR1P49238 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CX3CR1P49238 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.82■□□□□ 0.28
CX3CR1P49238 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CX3CR1P49238 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CX3CR1P49238 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.81■□□□□ 0.28
CX3CR1P49238 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.81■□□□□ 0.28
CX3CR1P49238 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.81■□□□□ 0.28
CX3CR1P49238 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.81■□□□□ 0.28
CX3CR1P49238 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 AC008403.3-201ENST00000598924 454 ntBASIC16.81■□□□□ 0.28
CX3CR1P49238 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.81■□□□□ 0.28
CX3CR1P49238 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CX3CR1P49238 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.81■□□□□ 0.28
CX3CR1P49238 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.81■□□□□ 0.28
CX3CR1P49238 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CX3CR1P49238 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CX3CR1P49238 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.8■□□□□ 0.28
CX3CR1P49238 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CX3CR1P49238 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CX3CR1P49238 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CX3CR1P49238 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CX3CR1P49238 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CX3CR1P49238 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CX3CR1P49238 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
CX3CR1P49238 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CX3CR1P49238 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms