Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 DPP3P2-201ENST00000416030 1696 ntBASIC16.72■□□□□ 0.27
COL8A1P27658 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 KRT16P6-202ENST00000425692 1426 ntBASIC16.72■□□□□ 0.27
COL8A1P27658 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
COL8A1P27658 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL8A1P27658 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.72■□□□□ 0.27
COL8A1P27658 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.72■□□□□ 0.27
COL8A1P27658 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
COL8A1P27658 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.72■□□□□ 0.27
COL8A1P27658 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.72■□□□□ 0.27
COL8A1P27658 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.72■□□□□ 0.27
COL8A1P27658 AL160286.2-201ENST00000567150 934 ntBASIC16.72■□□□□ 0.27
COL8A1P27658 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.72■□□□□ 0.27
COL8A1P27658 LINC02084-201ENST00000606069 1096 ntBASIC16.72■□□□□ 0.27
COL8A1P27658 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
COL8A1P27658 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL8A1P27658 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 AC005229.4-201ENST00000610085 2198 ntBASIC16.72■□□□□ 0.27
COL8A1P27658 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.72■□□□□ 0.27
COL8A1P27658 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.72■□□□□ 0.27
COL8A1P27658 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.72■□□□□ 0.27
COL8A1P27658 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL8A1P27658 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.72■□□□□ 0.27
COL8A1P27658 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.71■□□□□ 0.27
COL8A1P27658 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 MIR1233-2-201ENST00000408138 82 ntBASIC16.71■□□□□ 0.27
COL8A1P27658 MIR1233-1-201ENST00000408722 82 ntBASIC16.71■□□□□ 0.27
COL8A1P27658 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.71■□□□□ 0.27
COL8A1P27658 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 LINC00265-3P-201ENST00000447588 903 ntBASIC16.71■□□□□ 0.27
COL8A1P27658 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.71■□□□□ 0.27
COL8A1P27658 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 KRT18P31-201ENST00000506277 1292 ntBASIC16.71■□□□□ 0.27
COL8A1P27658 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.71■□□□□ 0.27
COL8A1P27658 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.71■□□□□ 0.27
COL8A1P27658 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.71■□□□□ 0.27
COL8A1P27658 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.71■□□□□ 0.27
COL8A1P27658 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
COL8A1P27658 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL8A1P27658 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.71■□□□□ 0.27
COL8A1P27658 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL8A1P27658 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL8A1P27658 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL8A1P27658 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.7■□□□□ 0.26
COL8A1P27658 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.7■□□□□ 0.26
COL8A1P27658 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.7■□□□□ 0.26
COL8A1P27658 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.7■□□□□ 0.26
COL8A1P27658 TSPY12P-201ENST00000421279 868 ntBASIC16.7■□□□□ 0.26
COL8A1P27658 PMS2P1-201ENST00000431037 1228 ntBASIC16.7■□□□□ 0.26
COL8A1P27658 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.7■□□□□ 0.26
COL8A1P27658 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.7■□□□□ 0.26
COL8A1P27658 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.7■□□□□ 0.26
COL8A1P27658 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
COL8A1P27658 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.7■□□□□ 0.26
COL8A1P27658 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
COL8A1P27658 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.7■□□□□ 0.26
COL8A1P27658 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL8A1P27658 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.7■□□□□ 0.26
COL8A1P27658 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.7■□□□□ 0.26
COL8A1P27658 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms