Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.21■□□□□ 0.83
BDNFP23560 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.21■□□□□ 0.83
BDNFP23560 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
BDNFP23560 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.2■□□□□ 0.82
BDNFP23560 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.2■□□□□ 0.82
BDNFP23560 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.2■□□□□ 0.82
BDNFP23560 FAM87A-204ENST00000613235 858 ntBASIC20.2■□□□□ 0.82
BDNFP23560 AL023803.3-201ENST00000615559 522 ntBASIC20.2■□□□□ 0.82
BDNFP23560 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
BDNFP23560 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BDNFP23560 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.19■□□□□ 0.82
BDNFP23560 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.19■□□□□ 0.82
BDNFP23560 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 TERF1P1-201ENST00000311003 1181 ntBASIC20.19■□□□□ 0.82
BDNFP23560 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 AL137013.1-201ENST00000432946 1228 ntBASIC20.19■□□□□ 0.82
BDNFP23560 KRT18P57-201ENST00000443599 1254 ntBASIC20.19■□□□□ 0.82
BDNFP23560 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.19■□□□□ 0.82
BDNFP23560 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.19■□□□□ 0.82
BDNFP23560 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.19■□□□□ 0.82
BDNFP23560 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
BDNFP23560 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.19■□□□□ 0.82
BDNFP23560 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BDNFP23560 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.18■□□□□ 0.82
BDNFP23560 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 AIRN-201ENST00000601203 4374 ntBASIC20.18■□□□□ 0.82
BDNFP23560 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 TMPOP1-202ENST00000424642 1267 ntBASIC20.18■□□□□ 0.82
BDNFP23560 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 TSPY21P-201ENST00000433481 731 ntBASIC20.18■□□□□ 0.82
BDNFP23560 AC007663.1-201ENST00000438948 1240 ntBASIC20.18■□□□□ 0.82
BDNFP23560 CA15P1-201ENST00000481698 905 ntBASIC20.18■□□□□ 0.82
BDNFP23560 AC010203.1-204ENST00000548782 407 ntBASIC20.18■□□□□ 0.82
BDNFP23560 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
BDNFP23560 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
BDNFP23560 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
BDNFP23560 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.18■□□□□ 0.82
BDNFP23560 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.18■□□□□ 0.82
BDNFP23560 AC092338.2-201ENST00000568827 1415 ntBASIC20.18■□□□□ 0.82
BDNFP23560 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BDNFP23560 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
BDNFP23560 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
BDNFP23560 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.17■□□□□ 0.82
BDNFP23560 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
BDNFP23560 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.17■□□□□ 0.82
BDNFP23560 TSPY17P-201ENST00000450329 467 ntBASIC20.17■□□□□ 0.82
BDNFP23560 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.17■□□□□ 0.82
BDNFP23560 AL353719.1-201ENST00000566847 864 ntBASIC20.17■□□□□ 0.82
BDNFP23560 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 AC092865.7-201ENST00000641832 219 ntBASIC20.17■□□□□ 0.82
BDNFP23560 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
BDNFP23560 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.17■□□□□ 0.82
BDNFP23560 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms