Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
CLDN3O15551 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN3O15551 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN3O15551 AC087499.1-201ENST00000418141 1075 ntBASIC20.94■□□□□ 0.94
CLDN3O15551 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN3O15551 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.94■□□□□ 0.94
CLDN3O15551 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.94■□□□□ 0.94
CLDN3O15551 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CLDN3O15551 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CLDN3O15551 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.94■□□□□ 0.94
CLDN3O15551 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN3O15551 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.94■□□□□ 0.94
CLDN3O15551 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.94■□□□□ 0.94
CLDN3O15551 AC096733.2-201ENST00000609937 1394 ntBASIC20.94■□□□□ 0.94
CLDN3O15551 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CLDN3O15551 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN3O15551 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN3O15551 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN3O15551 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN3O15551 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN3O15551 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.93■□□□□ 0.94
CLDN3O15551 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.93■□□□□ 0.94
CLDN3O15551 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.93■□□□□ 0.94
CLDN3O15551 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CLDN3O15551 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CLDN3O15551 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.93■□□□□ 0.94
CLDN3O15551 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN3O15551 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CLDN3O15551 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.92■□□□□ 0.94
CLDN3O15551 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.92■□□□□ 0.94
CLDN3O15551 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.92■□□□□ 0.94
CLDN3O15551 MFAP1P1-201ENST00000442257 1255 ntBASIC20.92■□□□□ 0.94
CLDN3O15551 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.92■□□□□ 0.94
CLDN3O15551 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.92■□□□□ 0.94
CLDN3O15551 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.92■□□□□ 0.94
CLDN3O15551 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN3O15551 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.92■□□□□ 0.94
CLDN3O15551 AC093484.2-201ENST00000580996 2166 ntBASIC20.92■□□□□ 0.94
CLDN3O15551 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CLDN3O15551 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 KRT8P11-201ENST00000409686 1436 ntBASIC20.91■□□□□ 0.94
CLDN3O15551 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.91■□□□□ 0.94
CLDN3O15551 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CLDN3O15551 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.91■□□□□ 0.94
CLDN3O15551 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 KRT8P9-201ENST00000558927 1449 ntBASIC20.91■□□□□ 0.94
CLDN3O15551 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.91■□□□□ 0.94
CLDN3O15551 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.91■□□□□ 0.94
CLDN3O15551 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
CLDN3O15551 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN3O15551 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CLDN3O15551 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CLDN3O15551 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CLDN3O15551 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CLDN3O15551 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.9■□□□□ 0.94
CLDN3O15551 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN3O15551 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
CLDN3O15551 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.9■□□□□ 0.94
CLDN3O15551 AC211429.1-201ENST00000415277 523 ntBASIC20.9■□□□□ 0.94
CLDN3O15551 TSPY21P-201ENST00000433481 731 ntBASIC20.9■□□□□ 0.94
CLDN3O15551 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN3O15551 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CLDN3O15551 PRSS44-201ENST00000515154 1146 ntBASIC20.9■□□□□ 0.94
CLDN3O15551 CKBP1-201ENST00000565489 1086 ntBASIC20.9■□□□□ 0.94
CLDN3O15551 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN3O15551 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms