Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
LRRC53A6NM62 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LRRC53A6NM62 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC53A6NM62 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.65■□□□□ 0.9
LRRC53A6NM62 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
LRRC53A6NM62 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC53A6NM62 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LRRC53A6NM62 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LRRC53A6NM62 AC007613.1-201ENST00000572811 2597 ntBASIC20.64■□□□□ 0.9
LRRC53A6NM62 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LRRC53A6NM62 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LRRC53A6NM62 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.64■□□□□ 0.9
LRRC53A6NM62 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
LRRC53A6NM62 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC53A6NM62 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.63■□□□□ 0.89
LRRC53A6NM62 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.63■□□□□ 0.89
LRRC53A6NM62 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.63■□□□□ 0.89
LRRC53A6NM62 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 POM121L13P-201ENST00000422362 380 ntBASIC20.63■□□□□ 0.89
LRRC53A6NM62 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.63■□□□□ 0.89
LRRC53A6NM62 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.63■□□□□ 0.89
LRRC53A6NM62 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.63■□□□□ 0.89
LRRC53A6NM62 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.63■□□□□ 0.89
LRRC53A6NM62 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC53A6NM62 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms